PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000395425	[[55614829, 55615191], [55615311, 55615402], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471], [55655659, 55655898], [55658180, 55658262]]	[[55615171, 55615191], [55615311, 55615402], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471]]
ENST00000247191	[[55614853, 55615191], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471], [55655659, 55655898], [55658180, 55658396]]	[[55615068, 55615191], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471]]
ENST00000554007	[[55617045, 55617566], [55618412, 55618659], [55619307, 55619362]]	None
ENST00000557645	[[55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471], [55655659, 55655898], [55657786, 55657890]]	[[55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471]]
ENST00000554067	[[55650323, 55650471], [55655659, 55655898], [55657786, 55657894], [55658180, 55658326]]	[[55650376, 55650471]]
NM_001146015	[[55614833, 55615191], [55615311, 55615402], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471], [55655659, 55655898], [55658180, 55658396]]	[[55615171, 55615191], [55615311, 55615402], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471]]
NM_014750	[[55614833, 55615191], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471], [55655659, 55655898], [55658180, 55658396]]	[[55615068, 55615191], [55617516, 55617566], [55618412, 55618659], [55619307, 55619365], [55621334, 55621524], [55625239, 55625459], [55629688, 55629793], [55636116, 55636277], [55637419, 55637505], [55642063, 55642190], [55642611, 55642736], [55643779, 55644054], [55646346, 55646417], [55647373, 55647496], [55647930, 55648015], [55649087, 55649150], [55650277, 55650471]]

Promoter

Chrom	Start	End	Description
chr14	55658252	55658321	CAGE_peak_1_at_DLGAP5_5end
chr14	55658323	55658334	CAGE_peak_2_at_DLGAP5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I055189	55189178	55189237	0.5	[{'connected_gene': 'DLGAP5', 'score': 550.77}, {'connected_gene': 'LGALS3', 'score': 0.2}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055139	55139002	55139725	0.2	[{'connected_gene': 'DLGAP5', 'score': 11.66}, {'connected_gene': 'LGALS3', 'score': 0.37}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055141	55141726	55142391	0.51	[{'connected_gene': 'LGALS3', 'score': 0.37}, {'connected_gene': 'DLGAP5', 'score': 0.25}, {'connected_gene': 'GC14M054989', 'score': 0.04}]
chr14	GH14I055152	55152163	55152312	0.43	[{'connected_gene': 'LGALS3', 'score': 12.4}, {'connected_gene': 'DLGAP5', 'score': 11.55}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055097	55097057	55109751	1.83	[{'connected_gene': 'LGALS3', 'score': 40.72}, {'connected_gene': 'LOC105370509', 'score': 34.62}, {'connected_gene': 'MAPK1IP1L', 'score': 25.39}, {'connected_gene': 'ATG14', 'score': 16.8}, {'connected_gene': 'SOCS4', 'score': 13.23}, {'connected_gene': 'GCH1', 'score': 12.33}, {'connected_gene': 'DLGAP5', 'score': 11.3}, {'connected_gene': 'FBXO34', 'score': 8.13}, {'connected_gene': 'ENSG00000259318', 'score': 5.61}, {'connected_gene': 'GC14M055058', 'score': 0.26}, {'connected_gene': 'GC14M055059', 'score': 0.26}, {'connected_gene': 'GC14M054989', 'score': 0.04}]
chr14	GH14I055113	55113140	55134826	2.73	[{'connected_gene': 'LGALS3', 'score': 578.57}, {'connected_gene': 'LOC105370509', 'score': 40.15}, {'connected_gene': 'GCH1', 'score': 11.0}, {'connected_gene': 'FBXO34', 'score': 10.91}, {'connected_gene': 'DLGAP5', 'score': 10.77}, {'connected_gene': 'ATG14', 'score': 6.91}, {'connected_gene': 'ENSG00000259318', 'score': 5.86}, {'connected_gene': 'MAPK1IP1L', 'score': 3.36}, {'connected_gene': 'GC14M055058', 'score': 0.21}, {'connected_gene': 'GC14M055059', 'score': 0.21}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055063	55063020	55067161	0.38	[{'connected_gene': 'LOC105370509', 'score': 13.6}, {'connected_gene': 'DLGAP5', 'score': 10.84}, {'connected_gene': 'GC14M055059', 'score': 0.44}, {'connected_gene': 'GC14M055058', 'score': 0.44}, {'connected_gene': 'MAPK1IP1L', 'score': 0.39}, {'connected_gene': 'LGALS3', 'score': 0.22}, {'connected_gene': 'GC14M054989', 'score': 0.03}]
chr14	GH14I055135	55135861	55138524	0.99	[{'connected_gene': 'LOC105370509', 'score': 40.33}, {'connected_gene': 'DLGAP5', 'score': 11.66}, {'connected_gene': 'LGALS3', 'score': 0.39}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055373	55373324	55375213	1.02	[{'connected_gene': 'LOC105370509', 'score': 25.25}, {'connected_gene': 'DLGAP5', 'score': 10.6}, {'connected_gene': 'ATG14', 'score': 3.32}, {'connected_gene': 'FBXO34', 'score': 3.23}, {'connected_gene': 'MAPK1IP1L', 'score': 1.83}, {'connected_gene': 'PIR34697', 'score': 0.44}, {'connected_gene': 'PIR35307', 'score': 0.44}, {'connected_gene': 'GC14M054989', 'score': 0.08}]
chr14	GH14I055084	55084511	55086076	0.66	[{'connected_gene': 'LOC105370509', 'score': 19.66}, {'connected_gene': 'MAPK1IP1L', 'score': 11.84}, {'connected_gene': 'LGALS3', 'score': 11.58}, {'connected_gene': 'DLGAP5', 'score': 11.25}, {'connected_gene': 'GC14M055059', 'score': 0.31}, {'connected_gene': 'GC14M055058', 'score': 0.31}, {'connected_gene': 'GC14M054989', 'score': 0.04}]
chr14	GH14I055145	55145916	55147920	0.2	[{'connected_gene': 'LOC105370509', 'score': 20.84}, {'connected_gene': 'LGALS3', 'score': 12.64}, {'connected_gene': 'ENSG00000259318', 'score': 6.06}, {'connected_gene': 'DLGAP5', 'score': 0.26}, {'connected_gene': 'GC14M054989', 'score': 0.04}]
chr14	GH14I055190	55189294	55192408	1.99	[{'connected_gene': 'LOC105370508', 'score': 550.77}, {'connected_gene': 'DLGAP5', 'score': 550.77}, {'connected_gene': 'MAPK1IP1L', 'score': 30.32}, {'connected_gene': 'LOC105370509', 'score': 13.12}, {'connected_gene': 'ATG14', 'score': 12.4}, {'connected_gene': 'GCH1', 'score': 4.85}, {'connected_gene': 'LGALS3', 'score': 0.2}, {'connected_gene': 'GC14M054989', 'score': 0.05}]
chr14	GH14I055297	55297801	55298798	0.77	[{'connected_gene': 'CHMP4BP1', 'score': 550.77}, {'connected_gene': 'LOC105370509', 'score': 43.59}, {'connected_gene': 'FBXO34', 'score': 12.01}, {'connected_gene': 'DLGAP5', 'score': 10.61}, {'connected_gene': 'ENSG00000259318', 'score': 5.56}, {'connected_gene': 'ENSG00000278818', 'score': 0.39}, {'connected_gene': 'GC14M054989', 'score': 0.06}]
chr14	GH14I055365	55365566	55367408	0.31	[{'connected_gene': 'PIR52112', 'score': 550.77}, {'connected_gene': 'GC14M055368', 'score': 550.77}, {'connected_gene': 'PIR53477', 'score': 550.77}, {'connected_gene': 'PIR35307', 'score': 550.77}, {'connected_gene': 'LOC105370509', 'score': 42.83}, {'connected_gene': 'DLGAP5', 'score': 11.12}, {'connected_gene': 'TBPL2', 'score': 10.2}, {'connected_gene': 'ENSG00000259318', 'score': 5.73}, {'connected_gene': 'ATG14', 'score': 0.25}, {'connected_gene': 'GC14M054989', 'score': 0.08}]