PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000242059	[[29959718, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029257, 30029414]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976]]
ENST00000426154	[[29959719, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029558, 30029734]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976]]
ENST00000425819	[[29963177, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30029257, 30029328]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994931]]
ENST00000434476	[[29963472, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029797, 30029905]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029797, 30029856]]
ENST00000421434	[[29980299, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029558, 30029821]]	[[29980299, 29980492], [29983592, 29983795], [29994794, 29994976]]
ENST00000494620	[[29983659, 29983795], [29994794, 29994976], [30008524, 30008629], [30029558, 30029688]]	None
ENST00000409570	[[29986814, 29986918], [29994794, 29994976], [30008524, 30008684], [30029257, 30029346]]	[[29986836, 29986918], [29994794, 29994976]]
ENST00000409497	[[29963289, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008887]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008683]]
ENST00000416113	[[29963404, 29963731], [29966067, 29966248], [29976171, 29976337], [29983592, 29983795], [29994794, 29994858]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29983592, 29983795], [29994794, 29994808]]
ENST00000438497	[[29983712, 29983795], [29994794, 29994976], [30008524, 30008684], [30009419, 30009554]]	[[29983712, 29983795], [29994794, 29994976]]
NM_014766	[[29959718, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029257, 30029425]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976]]
NM_001145515	[[29959718, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30029257, 30029425]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994931]]
NM_001145513	[[29959718, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029558, 30029734]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976]]
NM_001145514	[[29959718, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029797, 30029905]]	[[29963572, 29963731], [29966067, 29966248], [29976171, 29976337], [29980297, 29980492], [29983592, 29983795], [29994794, 29994976], [30008524, 30008684], [30029797, 30029856]]

Promoter

Chrom	Start	End	Description
chr7	30008849	30008863	CAGE_peak_8_at_SCRN1_5end
chr7	30009542	30009562	CAGE_peak_7_at_SCRN1_5end
chr7	30009960	30009983	CAGE_peak_5_at_SCRN1_5end
chr7	30029344	30029364	CAGE_peak_3_at_SCRN1_5end
chr7	30029367	30029474	CAGE_peak_1_at_SCRN1_5end
chr7	30029550	30029571	CAGE_peak_2_at_SCRN1_5end
chr7	30029574	30029586	CAGE_peak_4_at_SCRN1_5end
chr7	30030240	30030261	CAGE_peak_15_at_SCRN1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I029975	29975380	29975439	0.61	[{'connected_gene': 'SCRN1', 'score': 550.39}, {'connected_gene': 'PLEKHA8', 'score': 11.61}, {'connected_gene': 'FKBP14', 'score': 11.61}, {'connected_gene': 'ENSG00000238906', 'score': 10.25}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'LOC105375215', 'score': 0.39}]
chr7	GH07I029956	29956064	29956600	0.91	[{'connected_gene': 'SCRN1', 'score': 12.63}, {'connected_gene': 'LOC105375215', 'score': 12.63}, {'connected_gene': 'PLEKHA8', 'score': 11.12}, {'connected_gene': 'FKBP14', 'score': 11.12}, {'connected_gene': 'ENSG00000238906', 'score': 11.02}, {'connected_gene': 'ENSG00000231519', 'score': 10.59}, {'connected_gene': 'PIR51591', 'score': 0.39}, {'connected_gene': 'PIR47202', 'score': 0.28}]
chr7	GH07I030032	30032313	30033493	0.43	[{'connected_gene': 'SCRN1', 'score': 21.97}, {'connected_gene': 'LOC105375215', 'score': 10.94}, {'connected_gene': 'ENSG00000231519', 'score': 10.94}, {'connected_gene': 'PLEKHA8', 'score': 0.44}]
chr7	GH07I030224	30224201	30227212	1.39	[{'connected_gene': 'SCRN1', 'score': 9.77}, {'connected_gene': 'LOC105375215', 'score': 9.77}, {'connected_gene': 'ZNRF2', 'score': 8.05}, {'connected_gene': 'GC07M030247', 'score': 0.34}, {'connected_gene': 'LOC105375217', 'score': 0.26}]
chr7	GH07I029932	29932205	29932354	0.76	[{'connected_gene': 'SCRN1', 'score': 10.58}, {'connected_gene': 'LOC105375215', 'score': 10.58}, {'connected_gene': 'PIR47202', 'score': 0.37}, {'connected_gene': 'PIR51591', 'score': 0.28}]
chr7	GH07I030025	30025338	30030661	2.09	[{'connected_gene': 'PLEKHA8', 'score': 567.82}, {'connected_gene': 'FKBP14', 'score': 550.77}, {'connected_gene': 'SCRN1', 'score': 22.4}, {'connected_gene': 'ENSG00000226874', 'score': 11.78}, {'connected_gene': 'ENSG00000263683', 'score': 11.74}, {'connected_gene': 'LOC105375215', 'score': 11.19}, {'connected_gene': 'DKFZP586I1420', 'score': 10.19}, {'connected_gene': 'ENSG00000231519', 'score': 0.25}]
chr7	GH07I029977	29977658	29978236	0.31	[{'connected_gene': 'PLEKHA8', 'score': 11.28}, {'connected_gene': 'FKBP14', 'score': 11.28}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'LOC105375215', 'score': 0.44}, {'connected_gene': 'SCRN1', 'score': 0.39}]
chr7	GH07I030254	30254357	30256123	0.87	[{'connected_gene': 'ZNRF2', 'score': 11.91}, {'connected_gene': 'MIR550A1', 'score': 11.89}, {'connected_gene': 'NOD1', 'score': 10.27}, {'connected_gene': 'SCRN1', 'score': 9.64}, {'connected_gene': 'LOC105375215', 'score': 9.64}, {'connected_gene': 'GC07M030247', 'score': 0.44}, {'connected_gene': 'LOC105375218', 'score': 0.31}]
chr7	GH07I029976	29976271	29977200	0.69	[{'connected_gene': 'MTURN', 'score': 14.12}, {'connected_gene': 'PLEKHA8', 'score': 11.61}, {'connected_gene': 'FKBP14', 'score': 11.61}, {'connected_gene': 'ENSG00000238906', 'score': 10.25}, {'connected_gene': 'ENSG00000223813', 'score': 7.76}, {'connected_gene': 'PIR51591', 'score': 0.44}, {'connected_gene': 'SCRN1', 'score': 0.39}, {'connected_gene': 'LOC105375215', 'score': 0.39}]
chr7	GH07I030067	30067861	30069047	0.46	[{'connected_gene': 'MTURN', 'score': 13.61}, {'connected_gene': 'PLEKHA8', 'score': 10.84}, {'connected_gene': 'FKBP14', 'score': 10.84}, {'connected_gene': 'SCRN1', 'score': 10.65}, {'connected_gene': 'LOC105375215', 'score': 10.64}, {'connected_gene': 'ENSG00000231519', 'score': 0.44}]
chr7	GH07I029953	29953384	29954420	0.31	[{'connected_gene': 'LOC105375215', 'score': 12.63}, {'connected_gene': 'SCRN1', 'score': 12.61}, {'connected_gene': 'MTURN', 'score': 11.4}, {'connected_gene': 'PLEKHA8', 'score': 11.12}, {'connected_gene': 'FKBP14', 'score': 11.12}, {'connected_gene': 'ENSG00000238906', 'score': 11.02}, {'connected_gene': 'ENSG00000231519', 'score': 10.59}, {'connected_gene': 'PIR51591', 'score': 0.37}, {'connected_gene': 'PIR47202', 'score': 0.28}]
chr7	GH07I030023	30023401	30023600	0.54	[{'connected_gene': 'RPS27P16', 'score': 15.82}, {'connected_gene': 'MTURN', 'score': 14.15}, {'connected_gene': 'FKBP14', 'score': 0.77}, {'connected_gene': 'SCRN1', 'score': 0.29}, {'connected_gene': 'LOC105375215', 'score': 0.28}]
chr7	GH07I029968	29968437	29969307	0.38	[{'connected_gene': 'PIR51591', 'score': 550.77}, {'connected_gene': 'SCRN1', 'score': 12.57}, {'connected_gene': 'PLEKHA8', 'score': 11.6}, {'connected_gene': 'FKBP14', 'score': 11.6}, {'connected_gene': 'ENSG00000238906', 'score': 10.84}, {'connected_gene': 'PIR47202', 'score': 0.23}]
chr7	GH07I030038	30038305	30038454	0.31	[{'connected_gene': 'ENSG00000231519', 'score': 10.95}, {'connected_gene': 'SCRN1', 'score': 10.94}, {'connected_gene': 'LOC105375215', 'score': 10.93}, {'connected_gene': 'PLEKHA8', 'score': 0.39}]
chr7	GH07I029986	29986992	29990694	2	[{'connected_gene': 'PIR35583', 'score': 550.77}, {'connected_gene': 'SCRN1', 'score': 550.77}, {'connected_gene': 'LOC105375215', 'score': 550.77}, {'connected_gene': 'MTURN', 'score': 14.12}]
chr7	GH07I029984	29984984	29986400	0.83	[{'connected_gene': 'ENSG00000223813', 'score': 7.76}, {'connected_gene': 'SCRN1', 'score': 0.77}, {'connected_gene': 'LOC105375215', 'score': 0.77}, {'connected_gene': 'PIR51591', 'score': 0.37}]
chr7	GH07I029921	29921525	29921714	0.76	[{'connected_gene': 'PIR47202', 'score': 0.77}, {'connected_gene': 'PIR51591', 'score': 0.25}, {'connected_gene': 'SCRN1', 'score': 0.2}]