PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361136	[[150126121, 150129095], [150174862, 150174914], [150176162, 150177613]]	[[150127137, 150129095], [150174862, 150174914], [150176162, 150176423]]
ENST00000361875	[[150126121, 150129095], [150140835, 150140907], [150174862, 150174914], [150176162, 150184218]]	[[150127137, 150129095], [150140835, 150140907], [150174862, 150174914], [150176162, 150176423]]
ENST00000480589	[[150128755, 150129095], [150176162, 150176648]]	[[150128755, 150129095], [150176162, 150176172]]
ENST00000466814	[[150128795, 150129095], [150174862, 150174914], [150176162, 150177903]]	[[150128795, 150129095], [150174862, 150174914], [150176162, 150176423]]
ENST00000485421	[[150128965, 150129095], [150140835, 150140907], [150155984, 150156141], [150174862, 150174914], [150176162, 150176466]]	[[150128965, 150129095], [150140835, 150140907], [150155984, 150156027]]
ENST00000492828	[[150140825, 150140907], [150141008, 150141238]]	None
ENST00000460316	[[150174737, 150174914], [150176162, 150176915]]	None
NM_001303264	[[150126121, 150129095], [150174862, 150174914], [150176162, 150177906]]	[[150127137, 150129095], [150174862, 150174914], [150176162, 150176423]]
NM_014779	[[150126121, 150129095], [150140835, 150140907], [150174862, 150174914], [150176162, 150177906]]	[[150127137, 150129095], [150140835, 150140907], [150174862, 150174914], [150176162, 150176423]]
NR_130136	[[150126121, 150129095], [150140835, 150140907], [150155984, 150156141], [150174862, 150174914], [150176162, 150177906]]	None

Promoter

Chrom	Start	End	Description
chr3	150126022	150126034	CAGE_peak_10_at_TSC22D2_5end
chr3	150126038	150126052	CAGE_peak_8_at_TSC22D2_5end
chr3	150126065	150126097	CAGE_peak_1_at_TSC22D2_5end
chr3	150126101	150126118	CAGE_peak_6_at_TSC22D2_5end
chr3	150126136	150126158	CAGE_peak_4_at_TSC22D2_5end
chr3	150126200	150126211	CAGE_peak_11_at_TSC22D2_5end
chr3	150126416	150126437	CAGE_peak_3_at_TSC22D2_5end
chr3	150126440	150126455	CAGE_peak_9_at_TSC22D2_5end
chr3	150126706	150126754	CAGE_peak_5_at_TSC22D2_5end
chr3	150126759	150126784	CAGE_peak_2_at_TSC22D2_5end
chr3	150126904	150126958	CAGE_peak_7_at_TSC22D2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I150277	150277351	150279919	0.69	[{'connected_gene': 'TSC22D2', 'score': 10.41}, {'connected_gene': 'EIF2A', 'score': 5.13}, {'connected_gene': 'LOC105374154', 'score': 0.77}, {'connected_gene': 'LINC01214', 'score': 0.25}]
chr3	GH03I149497	149497770	149499689	0.2	[{'connected_gene': 'TSC22D2', 'score': 5.2}, {'connected_gene': 'TM4SF4', 'score': 4.52}, {'connected_gene': 'LOC100421817', 'score': 0.77}, {'connected_gene': 'RNU6-1098P', 'score': 0.31}]
chr3	GH03I150495	150495201	150495843	0.88	[{'connected_gene': 'TSC22D2', 'score': 12.16}, {'connected_gene': 'PFN2', 'score': 10.75}, {'connected_gene': 'ENSG00000242791', 'score': 10.74}, {'connected_gene': 'ANKUB1', 'score': 10.74}, {'connected_gene': 'EIF2A', 'score': 6.07}, {'connected_gene': 'GC03M150475', 'score': 0.37}]
chr3	GH03I150384	150384193	150386094	1.63	[{'connected_gene': 'TSC22D2', 'score': 26.91}, {'connected_gene': 'SERP1', 'score': 4.56}, {'connected_gene': 'SIAH2', 'score': 1.33}, {'connected_gene': 'LINC01214', 'score': 0.21}]
chr3	GH03I150367	150367516	150374000	1.39	[{'connected_gene': 'TSC22D2', 'score': 4.54}, {'connected_gene': 'MED12L', 'score': 4.41}, {'connected_gene': 'LINC01214', 'score': 0.25}]
chr3	GH03I151093	151093174	151095202	0.56	[{'connected_gene': 'TSC22D2', 'score': 10.59}, {'connected_gene': 'MED12L', 'score': 0.44}, {'connected_gene': 'GC03M151148', 'score': 0.21}]
chr3	GH03I150273	150273417	150273791	0.25	[{'connected_gene': 'TSC22D2', 'score': 6.07}, {'connected_gene': 'RNF13', 'score': 2.9}, {'connected_gene': 'SERP1', 'score': 2.15}, {'connected_gene': 'LOC105374154', 'score': 0.77}, {'connected_gene': 'ENSG00000278234', 'score': 0.29}, {'connected_gene': 'LINC01214', 'score': 0.23}]
chr3	GH03I150299	150299010	150299904	0.31	[{'connected_gene': 'TSC22D2', 'score': 10.73}, {'connected_gene': 'LINC01214', 'score': 0.34}, {'connected_gene': 'LOC105374154', 'score': 0.34}]
chr3	GH03I150300	150300377	150302663	0.8	[{'connected_gene': 'TSC22D2', 'score': 10.73}, {'connected_gene': 'LINC01214', 'score': 0.34}, {'connected_gene': 'LOC105374154', 'score': 0.31}]
chr3	GH03I150394	150394282	150395145	0.31	[{'connected_gene': 'TSC22D2', 'score': 0.39}, {'connected_gene': 'LINC01214', 'score': 0.19}]
chr3	GH03I150442	150442664	150444121	0.46	[{'connected_gene': 'TSC22D2', 'score': 11.74}, {'connected_gene': 'NPM1P29', 'score': 5.11}, {'connected_gene': 'GC03P150463', 'score': 0.37}, {'connected_gene': 'GC03M150408', 'score': 0.29}]
chr3	GH03I150433	150433801	150434400	0.2	[{'connected_gene': 'TSC22D2', 'score': 11.42}, {'connected_gene': 'GC03M150408', 'score': 0.34}, {'connected_gene': 'GC03P150463', 'score': 0.31}]
chr3	GH03I150395	150395908	150397889	0.4	[{'connected_gene': 'EIF2A', 'score': 5.68}, {'connected_gene': 'TSC22D2', 'score': 0.39}, {'connected_gene': 'LINC01214', 'score': 0.19}]
chr3	GH03I150387	150387923	150389287	0.31	[{'connected_gene': 'EIF2A', 'score': 6.59}, {'connected_gene': 'TSC22D2', 'score': 0.37}, {'connected_gene': 'LINC01214', 'score': 0.21}]
chr3	GH03I150418	150418496	150420735	0.43	[{'connected_gene': 'EIF2A', 'score': 6.76}, {'connected_gene': 'GC03M150408', 'score': 0.44}, {'connected_gene': 'TSC22D2', 'score': 0.39}, {'connected_gene': 'GC03P150463', 'score': 0.26}]
chr3	GH03I150365	150365046	150365692	0.97	[{'connected_gene': 'EIF2A', 'score': 4.76}, {'connected_gene': 'LINC01214', 'score': 0.26}, {'connected_gene': 'TSC22D2', 'score': 0.26}]
chr3	GH03I150446	150446142	150452891	1.14	[{'connected_gene': 'EIF2A', 'score': 5.68}, {'connected_gene': 'NPM1P29', 'score': 5.23}, {'connected_gene': 'GC03P150463', 'score': 0.39}, {'connected_gene': 'GC03M150408', 'score': 0.28}, {'connected_gene': 'TSC22D2', 'score': 0.26}]
chr3	GH03I150759	150759014	150766484	2.55	[{'connected_gene': 'SIAH2', 'score': 559.15}, {'connected_gene': 'SIAH2-AS1', 'score': 550.77}, {'connected_gene': 'TSC22D2', 'score': 4.3}, {'connected_gene': 'SERP1', 'score': 1.86}, {'connected_gene': 'GPR171', 'score': 1.54}, {'connected_gene': 'SELENOT', 'score': 1.2}, {'connected_gene': 'LOC105374155', 'score': 0.77}]
chr3	GH03I150220	150220801	150221600	0.9	[{'connected_gene': 'PFN2', 'score': 12.03}, {'connected_gene': 'ENSG00000242791', 'score': 12.01}, {'connected_gene': 'ANKUB1', 'score': 12.01}, {'connected_gene': 'TSC22D2', 'score': 11.08}, {'connected_gene': 'LINC01998', 'score': 9.71}, {'connected_gene': 'ENSG00000241048', 'score': 0.77}, {'connected_gene': 'GC03P150194', 'score': 0.31}]
chr3	GH03I150227	150227914	150228201	0.89	[{'connected_gene': 'PFN2', 'score': 11.33}, {'connected_gene': 'ANKUB1', 'score': 11.3}, {'connected_gene': 'ENSG00000242791', 'score': 11.3}, {'connected_gene': 'TSC22D2', 'score': 10.62}, {'connected_gene': 'ENSG00000241048', 'score': 0.77}, {'connected_gene': 'LINC01213', 'score': 0.39}]
chr3	GH03I150215	150215757	150217103	0.94	[{'connected_gene': 'PFN2', 'score': 11.77}, {'connected_gene': 'ENSG00000242791', 'score': 11.74}, {'connected_gene': 'ANKUB1', 'score': 11.74}, {'connected_gene': 'LOC730021', 'score': 10.63}, {'connected_gene': 'TSC22D2', 'score': 10.45}, {'connected_gene': 'LINC01998', 'score': 10.12}, {'connected_gene': 'ENSG00000241048', 'score': 0.44}, {'connected_gene': 'GC03P150194', 'score': 0.34}]
chr3	GH03I150598	150598167	150607003	2.51	[{'connected_gene': 'SELENOT', 'score': 556.03}, {'connected_gene': 'SERP1', 'score': 550.77}, {'connected_gene': 'EIF2A', 'score': 52.33}, {'connected_gene': 'COMMD2', 'score': 11.96}, {'connected_gene': 'TSC22D2', 'score': 11.26}, {'connected_gene': 'ERICH6', 'score': 10.68}, {'connected_gene': 'ERICH6-AS1', 'score': 10.68}]
chr3	GH03I150344	150344175	150352560	1.28	[{'connected_gene': 'COMMD2', 'score': 15.67}, {'connected_gene': 'TSC22D2', 'score': 15.11}, {'connected_gene': 'EIF2A', 'score': 4.99}, {'connected_gene': 'P2RY14', 'score': 4.62}, {'connected_gene': 'LINC01214', 'score': 0.34}]
chr3	GH03I150375	150375576	150377115	1.3	[{'connected_gene': 'COMMD2', 'score': 14.18}, {'connected_gene': 'EIF2A', 'score': 11.95}, {'connected_gene': 'TSC22D2', 'score': 11.38}, {'connected_gene': 'LINC01214', 'score': 0.23}]
chr3	GH03I149811	149811919	149817803	2.33	[{'connected_gene': 'RNF13', 'score': 573.49}, {'connected_gene': 'PFN2', 'score': 25.26}, {'connected_gene': 'COMMD2', 'score': 16.93}, {'connected_gene': 'TSC22D2', 'score': 11.2}, {'connected_gene': 'TMEM183B', 'score': 7.36}, {'connected_gene': 'RNU6-720P', 'score': 0.15}, {'connected_gene': 'ANKUB1', 'score': 0.1}]
chr3	GH03I149500	149500698	149502779	0.58	[{'connected_gene': 'RNU6-1098P', 'score': 11.27}, {'connected_gene': 'COMMD2', 'score': 10.24}, {'connected_gene': 'TM4SF4', 'score': 7.23}, {'connected_gene': 'TMEM183B', 'score': 5.6}, {'connected_gene': 'TSC22D2', 'score': 4.99}, {'connected_gene': 'LOC100421817', 'score': 0.44}]
chr3	GH03I150733	150733201	150745626	1.74	[{'connected_gene': 'LOC101928105', 'score': 550.77}, {'connected_gene': 'SIAH2', 'score': 13.96}, {'connected_gene': 'SIAH2-AS1', 'score': 12.02}, {'connected_gene': 'ERICH6', 'score': 11.35}, {'connected_gene': 'ERICH6-AS1', 'score': 11.33}, {'connected_gene': 'TSC22D2', 'score': 6.6}, {'connected_gene': 'SERP1', 'score': 4.38}, {'connected_gene': 'CLRN1', 'score': 3.01}, {'connected_gene': 'PIR41342', 'score': 0.77}]
chr3	GH03I150327	150327871	150328979	0.31	[{'connected_gene': 'LINC01214', 'score': 0.77}, {'connected_gene': 'TSC22D2', 'score': 0.18}]
chr3	GH03I150342	150342728	150343603	0.76	[{'connected_gene': 'LINC01214', 'score': 0.37}, {'connected_gene': 'TSC22D2', 'score': 0.2}]
chr3	GH03I150362	150362192	150363442	0.94	[{'connected_gene': 'LINC01214', 'score': 0.28}, {'connected_gene': 'TSC22D2', 'score': 0.25}]
chr3	GH03I150357	150357787	150358721	0.2	[{'connected_gene': 'LINC01214', 'score': 0.29}, {'connected_gene': 'TSC22D2', 'score': 0.23}]
chr3	GH03I149939	149939526	149940063	0.29	[{'connected_gene': 'NPM1P29', 'score': 550.77}, {'connected_gene': 'TSC22D2', 'score': 2.14}, {'connected_gene': 'RNF13', 'score': 1.54}, {'connected_gene': 'RNU6-720P', 'score': 0.34}, {'connected_gene': 'ANKUB1', 'score': 0.31}]
chr3	GH03I150406	150406536	150416120	2.3	[{'connected_gene': 'GC03M150408', 'score': 550.77}, {'connected_gene': 'TSC22D2', 'score': 550.77}, {'connected_gene': 'WWTR1', 'score': 11.61}, {'connected_gene': 'COMMD2', 'score': 11.56}, {'connected_gene': 'WWTR1-IT1', 'score': 10.58}, {'connected_gene': 'EIF2A', 'score': 5.97}, {'connected_gene': 'NPM1P29', 'score': 5.25}, {'connected_gene': 'GC03P150463', 'score': 0.23}]
chr3	GH03I150225	150225913	150226670	0.31	[{'connected_gene': 'ENSG00000241048', 'score': 550.77}, {'connected_gene': 'PFN2', 'score': 11.88}, {'connected_gene': 'ANKUB1', 'score': 11.86}, {'connected_gene': 'ENSG00000242791', 'score': 11.85}, {'connected_gene': 'TSC22D2', 'score': 11.09}, {'connected_gene': 'LINC01998', 'score': 9.58}, {'connected_gene': 'LINC01213', 'score': 0.39}]