PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000284320	[[100082274, 100084561], [100086887, 100087010], [100087881, 100087979], [100091449, 100091566], [100092381, 100092489], [100093861, 100093996], [100096548, 100096756], [100100458, 100100607], [100103322, 100103432], [100105061, 100105188], [100105648, 100105822], [100119469, 100120242]]	[[100084407, 100084561], [100086887, 100087010], [100087881, 100087979], [100091449, 100091566], [100092381, 100092489], [100093861, 100093996], [100096548, 100096756], [100100458, 100100607], [100103322, 100103432], [100105061, 100105188], [100105648, 100105822], [100119469, 100119793]]
ENST00000483945	[[100090849, 100091566], [100092381, 100092569]]	None
ENST00000492171	[[100096259, 100096756], [100100458, 100100616]]	None
NM_014820	[[100082302, 100084561], [100086887, 100087010], [100087881, 100087979], [100091449, 100091566], [100092381, 100092489], [100093861, 100093996], [100096548, 100096756], [100100458, 100100607], [100103322, 100103432], [100105061, 100105188], [100105648, 100105822], [100119469, 100120242]]	[[100084407, 100084561], [100086887, 100087010], [100087881, 100087979], [100091449, 100091566], [100092381, 100092489], [100093861, 100093996], [100096548, 100096756], [100100458, 100100607], [100103322, 100103432], [100105061, 100105188], [100105648, 100105822], [100119469, 100119793]]

Promoter

Chrom	Start	End	Description
chr3	100119874	100119895	CAGE_peak_3_at_TOMM70A_5end
chr3	100119897	100119967	CAGE_peak_1_at_TOMM70A_5end
chr3	100120004	100120020	CAGE_peak_4_at_TOMM70A_5end
chr3	100120223	100120301	CAGE_peak_2_at_TOMM70A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I100386	100386013	100387465	0.73	[{'connected_gene': 'TOMM70', 'score': 9.33}, {'connected_gene': 'LNP1', 'score': 0.39}, {'connected_gene': 'NIT2', 'score': 0.23}]
chr3	GH03I100608	100608852	100616052	1.47	[{'connected_gene': 'ADGRG7', 'score': 550.77}, {'connected_gene': 'TFG', 'score': 16.39}, {'connected_gene': 'ENSG00000252989', 'score': 11.27}, {'connected_gene': 'TOMM70', 'score': 5.81}, {'connected_gene': 'TMEM45A', 'score': 5.01}, {'connected_gene': 'LNP1', 'score': 4.8}, {'connected_gene': 'GC03M100588', 'score': 0.37}]
chr3	GH03I100309	100309248	100309631	0.22	[{'connected_gene': 'NIT2', 'score': 11.94}, {'connected_gene': 'TBC1D23', 'score': 11.91}, {'connected_gene': 'LNP1', 'score': 10.82}, {'connected_gene': 'TOMM70', 'score': 10.82}, {'connected_gene': 'TFG', 'score': 9.79}]
chr3	GH03I100333	100333694	100337095	1.99	[{'connected_gene': 'NIT2', 'score': 563.51}, {'connected_gene': 'LNP1', 'score': 31.32}, {'connected_gene': 'TOMM70', 'score': 18.25}, {'connected_gene': 'TBC1D23', 'score': 16.69}]
chr3	GH03I100359	100359139	100359354	0.25	[{'connected_gene': 'NIT2', 'score': 12.08}, {'connected_gene': 'LNP1', 'score': 11.49}, {'connected_gene': 'TOMM70', 'score': 11.49}, {'connected_gene': 'FILIP1L', 'score': 1.21}]
chr3	GH03I100360	100360335	100360578	0.22	[{'connected_gene': 'NIT2', 'score': 12.05}, {'connected_gene': 'LNP1', 'score': 11.49}, {'connected_gene': 'TOMM70', 'score': 11.49}]
chr3	GH03I100518	100518537	100520035	0.46	[{'connected_gene': 'TMEM45A', 'score': 8.66}, {'connected_gene': 'TOMM70', 'score': 5.21}, {'connected_gene': 'TFG', 'score': 5.11}, {'connected_gene': 'GC03P100533', 'score': 0.39}]
chr3	GH03I100553	100553393	100555934	0.59	[{'connected_gene': 'TMEM45A', 'score': 13.3}, {'connected_gene': 'LNP1', 'score': 10.05}, {'connected_gene': 'TOMM70', 'score': 10.05}, {'connected_gene': 'GC03P100561', 'score': 0.44}, {'connected_gene': 'GC03P100533', 'score': 0.34}]
chr3	GH03I100556	100556450	100557468	0.66	[{'connected_gene': 'TMEM45A', 'score': 11.29}, {'connected_gene': 'LNP1', 'score': 10.05}, {'connected_gene': 'TOMM70', 'score': 10.05}, {'connected_gene': 'GC03P100561', 'score': 0.77}, {'connected_gene': 'GC03P100533', 'score': 0.34}]
chr3	GH03I100395	100395368	100397200	0.6	[{'connected_gene': 'LNP1', 'score': 20.82}, {'connected_gene': 'TOMM70', 'score': 0.44}, {'connected_gene': 'NIT2', 'score': 0.21}]
chr3	GH03I100369	100369585	100369858	0.24	[{'connected_gene': 'LNP1', 'score': 11.07}, {'connected_gene': 'TOMM70', 'score': 11.07}, {'connected_gene': 'NIT2', 'score': 0.28}]
chr3	GH03I100398	100398001	100398200	0.2	[{'connected_gene': 'LNP1', 'score': 0.77}, {'connected_gene': 'TOMM70', 'score': 0.77}, {'connected_gene': 'NIT2', 'score': 0.21}]
chr3	GH03I100399	100399390	100404289	2.07	[{'connected_gene': 'LNP1', 'score': 570.83}, {'connected_gene': 'TOMM70', 'score': 558.51}, {'connected_gene': 'PIR48705', 'score': 550.77}, {'connected_gene': 'TBC1D23', 'score': 11.06}, {'connected_gene': 'TFG', 'score': 9.84}, {'connected_gene': 'GC03P100464', 'score': 0.21}]
chr3	GH03I100316	100316657	100316846	0.67	[{'connected_gene': 'LNP1', 'score': 10.59}, {'connected_gene': 'TOMM70', 'score': 10.59}, {'connected_gene': 'TFG', 'score': 10.31}, {'connected_gene': 'TBC1D23', 'score': 7.37}, {'connected_gene': 'NIT2', 'score': 0.37}]
chr3	GH03I099950	99950825	99954208	1	[{'connected_gene': 'FILIP1L', 'score': 17.33}, {'connected_gene': 'TOMM70', 'score': 4.24}, {'connected_gene': 'GC03M099958', 'score': 0.44}, {'connected_gene': 'GC03M099937', 'score': 0.39}, {'connected_gene': 'CMSS1', 'score': 0.12}]
chr3	GH03I099934	99934808	99936228	1.16	[{'connected_gene': 'FILIP1L', 'score': 30.22}, {'connected_gene': 'CMSS1', 'score': 10.26}, {'connected_gene': 'TOMM70', 'score': 4.23}, {'connected_gene': 'GC03P099933', 'score': 0.77}, {'connected_gene': 'GC03M099937', 'score': 0.77}]
chr3	GH03I099858	99858583	99863984	1.32	[{'connected_gene': 'FILIP1L', 'score': 30.45}, {'connected_gene': 'TBC1D23', 'score': 11.1}, {'connected_gene': 'CMSS1', 'score': 10.18}, {'connected_gene': 'TOMM70', 'score': 3.98}, {'connected_gene': 'PIR40829', 'score': 0.39}, {'connected_gene': 'GC03M099852', 'score': 0.31}]
chr3	GH03I100797	100797535	100797586	0.23	[{'connected_gene': 'RNU6-865P', 'score': 11.02}, {'connected_gene': 'TOMM70', 'score': 4.68}, {'connected_gene': 'ABI3BP', 'score': 3.54}, {'connected_gene': 'GC03P100791', 'score': 0.44}, {'connected_gene': 'GC03P100818', 'score': 0.34}]
chr3	GH03I100591	100591089	100592181	0.69	[{'connected_gene': 'TFG', 'score': 18.35}, {'connected_gene': 'LNP1', 'score': 10.96}, {'connected_gene': 'TOMM70', 'score': 10.96}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'GC03P100589', 'score': 0.77}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]
chr3	GH03I099824	99824490	99826216	0.98	[{'connected_gene': 'HP09053', 'score': 550.77}, {'connected_gene': 'FILIP1L', 'score': 17.54}, {'connected_gene': 'TBC1D23', 'score': 10.12}, {'connected_gene': 'TOMM70', 'score': 3.98}, {'connected_gene': 'CMSS1', 'score': 0.44}, {'connected_gene': 'PIR39775', 'score': 0.34}]
chr3	GH03I100590	100590401	100590959	1.11	[{'connected_gene': 'GC03P100589', 'score': 550.77}, {'connected_gene': 'LNP1', 'score': 10.34}, {'connected_gene': 'TOMM70', 'score': 10.34}, {'connected_gene': 'TMEM45A', 'score': 7.45}, {'connected_gene': 'ADGRG7', 'score': 0.37}, {'connected_gene': 'GC03M100588', 'score': 0.28}]