PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr4	76587143	76587175	CAGE_peak_7_at_G3BP2_5end
chr4	76598052	76598085	CAGE_peak_9_at_G3BP2_5end
chr4	76598296	76598318	CAGE_peak_4_at_G3BP2_5end
chr4	76598326	76598346	CAGE_peak_5_at_G3BP2_5end
chr4	76598434	76598445	CAGE_peak_6_at_G3BP2_5end
chr4	76598527	76598542	CAGE_peak_3_at_G3BP2_5end
chr4	76598544	76598605	CAGE_peak_1_at_G3BP2_5end
chr4	76649546	76649675	CAGE_peak_2_at_G3BP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I075654	75654558	75656061	0.31	[{'connected_gene': 'G3BP2', 'score': 22.96}, {'connected_gene': 'CDKL2', 'score': 11.28}, {'connected_gene': 'USO1', 'score': 10.99}, {'connected_gene': 'GC04M075663', 'score': 0.44}, {'connected_gene': 'ENSG00000201644', 'score': 0.44}, {'connected_gene': 'GC04P075638', 'score': 0.37}]
chr4	GH04I075695	75695105	75696975	0.88	[{'connected_gene': 'G3BP2', 'score': 6.94}, {'connected_gene': 'CDKL2', 'score': 5.53}, {'connected_gene': 'CCDC158', 'score': 4.92}, {'connected_gene': 'USO1', 'score': 4.8}, {'connected_gene': 'NAAA', 'score': 4.41}, {'connected_gene': 'RCHY1', 'score': 1.61}, {'connected_gene': 'THAP6', 'score': 1.55}, {'connected_gene': 'NUP54', 'score': 1.5}, {'connected_gene': 'GC04M075663', 'score': 0.29}, {'connected_gene': 'ENSG00000201644', 'score': 0.29}]
chr4	GH04I075671	75671213	75675587	2.26	[{'connected_gene': 'G3BP2', 'score': 563.19}, {'connected_gene': 'USO1', 'score': 17.54}, {'connected_gene': 'CDKL2', 'score': 11.71}, {'connected_gene': 'NUP54', 'score': 10.01}, {'connected_gene': 'NAAA', 'score': 4.4}, {'connected_gene': 'GC04M075663', 'score': 0.39}, {'connected_gene': 'ENSG00000201644', 'score': 0.39}]
chr4	GH04I075701	75701860	75706972	1.03	[{'connected_gene': 'G3BP2', 'score': 18.94}, {'connected_gene': 'USO1', 'score': 18.4}, {'connected_gene': 'CDKL2', 'score': 11.04}, {'connected_gene': 'ODAPH', 'score': 10.13}, {'connected_gene': 'CCDC158', 'score': 5.36}, {'connected_gene': 'GC04M075663', 'score': 0.26}, {'connected_gene': 'ENSG00000201644', 'score': 0.26}]
chr4	GH04I075697	75697881	75699685	1.35	[{'connected_gene': 'G3BP2', 'score': 7.89}, {'connected_gene': 'USO1', 'score': 6.26}, {'connected_gene': 'RCHY1', 'score': 1.45}, {'connected_gene': 'GC04M075663', 'score': 0.28}, {'connected_gene': 'ENSG00000201644', 'score': 0.28}]
chr4	GH04I075686	75686173	75687329	0.96	[{'connected_gene': 'G3BP2', 'score': 19.41}, {'connected_gene': 'USO1', 'score': 16.49}, {'connected_gene': 'LOC105377284', 'score': 11.32}, {'connected_gene': 'RNU2-16P', 'score': 11.32}, {'connected_gene': 'CDKL2', 'score': 10.67}, {'connected_gene': 'RCHY1', 'score': 1.25}, {'connected_gene': 'GC04M075663', 'score': 0.34}, {'connected_gene': 'ENSG00000201644', 'score': 0.34}]
chr4	GH04I075668	75667401	75667800	0.2	[{'connected_gene': 'G3BP2', 'score': 19.62}, {'connected_gene': 'USO1', 'score': 12.4}, {'connected_gene': 'GC04M075663', 'score': 0.44}, {'connected_gene': 'ENSG00000201644', 'score': 0.44}]
chr4	GH04I075667	75667919	75669867	0.56	[{'connected_gene': 'G3BP2', 'score': 24.24}, {'connected_gene': 'USO1', 'score': 16.6}, {'connected_gene': 'GC04M075663', 'score': 0.44}, {'connected_gene': 'ENSG00000201644', 'score': 0.44}]
chr4	GH04I075658	75658641	75659875	0.54	[{'connected_gene': 'G3BP2', 'score': 24.21}, {'connected_gene': 'USO1', 'score': 16.45}, {'connected_gene': 'GC04M075663', 'score': 0.77}, {'connected_gene': 'ENSG00000201644', 'score': 0.77}, {'connected_gene': 'GC04P075638', 'score': 0.34}]
chr4	GH04I075707	75707955	75708846	0.76	[{'connected_gene': 'CDKL2', 'score': 10.97}, {'connected_gene': 'ODAPH', 'score': 9.89}, {'connected_gene': 'G3BP2', 'score': 7.99}, {'connected_gene': 'USO1', 'score': 4.35}, {'connected_gene': 'GC04M075663', 'score': 0.25}, {'connected_gene': 'ENSG00000201644', 'score': 0.25}]
chr4	GH04I075629	75629697	75631386	1.89	[{'connected_gene': 'CDKL2', 'score': 550.77}, {'connected_gene': 'ODAPH', 'score': 10.17}, {'connected_gene': 'G3BP2', 'score': 7.78}, {'connected_gene': 'GC04M075630', 'score': 0.77}]
chr4	GH04I075710	75710200	75710401	0.46	[{'connected_gene': 'CDKL2', 'score': 10.97}, {'connected_gene': 'ODAPH', 'score': 9.89}, {'connected_gene': 'USO1', 'score': 5.0}, {'connected_gene': 'G3BP2', 'score': 0.39}, {'connected_gene': 'GC04M075663', 'score': 0.25}, {'connected_gene': 'ENSG00000201644', 'score': 0.25}]
chr4	GH04I075722	75722181	75727304	2.26	[{'connected_gene': 'USO1', 'score': 557.88}, {'connected_gene': 'G3BP2', 'score': 550.77}, {'connected_gene': 'CDKL2', 'score': 10.08}, {'connected_gene': 'ODAPH', 'score': 9.56}, {'connected_gene': 'GC04P075797', 'score': 0.19}]
chr4	GH04I075682	75682980	75683431	0.31	[{'connected_gene': 'USO1', 'score': 11.65}, {'connected_gene': 'G3BP2', 'score': 11.65}, {'connected_gene': 'ODAPH', 'score': 10.1}, {'connected_gene': 'GC04M075663', 'score': 0.34}, {'connected_gene': 'ENSG00000201644', 'score': 0.34}]
chr4	GH04I075665	75665939	75667260	0.54	[{'connected_gene': 'USO1', 'score': 12.4}, {'connected_gene': 'G3BP2', 'score': 12.4}, {'connected_gene': 'GC04M075663', 'score': 0.77}, {'connected_gene': 'ENSG00000201644', 'score': 0.77}]
chr4	GH04I075744	75744764	75746665	0.82	[{'connected_gene': 'USO1', 'score': 6.92}, {'connected_gene': 'G3BP2', 'score': 0.34}, {'connected_gene': 'GC04P075797', 'score': 0.23}]
chr4	GH04I075714	75714513	75716201	0.8	[{'connected_gene': 'ODAPH', 'score': 9.56}, {'connected_gene': 'USO1', 'score': 6.43}, {'connected_gene': 'G3BP2', 'score': 4.99}, {'connected_gene': 'GC04M075663', 'score': 0.23}, {'connected_gene': 'ENSG00000201644', 'score': 0.23}]
chr4	GH04I076205	76205669	76215919	2.5	[{'connected_gene': 'FAM47E', 'score': 569.73}, {'connected_gene': 'SCARB2', 'score': 556.87}, {'connected_gene': 'GC04P076210', 'score': 550.77}, {'connected_gene': 'NUP54', 'score': 39.17}, {'connected_gene': 'THAP6', 'score': 16.03}, {'connected_gene': 'SDAD1', 'score': 14.66}, {'connected_gene': 'ART3', 'score': 9.06}, {'connected_gene': 'NAAA', 'score': 7.1}, {'connected_gene': 'G3BP2', 'score': 5.88}, {'connected_gene': 'STBD1', 'score': 4.69}, {'connected_gene': 'CXCL10', 'score': 1.4}, {'connected_gene': 'CXCL11', 'score': 1.4}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000395719	[[76567965, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598202, 76598298]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000359707	[[76567965, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598391, 76599153]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000357854	[[76569572, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598391, 76598585]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000507133	[[76571638, 76571640], [76572212, 76572341], [76573822, 76574286]]	None
ENST00000507947	[[76580097, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582878]]	None
ENST00000510902	[[76580249, 76580430], [76580951, 76581054], [76584026, 76584080]]	[[76581036, 76581054], [76584026, 76584080]]
ENST00000503660	[[76580380, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76587396, 76587709], [76598202, 76598341]]	[[76580380, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000502654	[[76581026, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76598391, 76598562]]	None
ENST00000507745	[[76582124, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76595545, 76595611], [76597796, 76597865]]	[[76582124, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000513927	[[76582156, 76582198], [76582740, 76582914], [76584026, 76584108], [76598202, 76598330]]	None
ENST00000509100	[[76582174, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76597996, 76598111]]	[[76582174, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000511146	[[76582744, 76582914], [76584026, 76584108], [76587114, 76587233], [76597689, 76597895]]	[[76582744, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000515457	[[76582759, 76582914], [76584026, 76584108], [76587114, 76587257], [76598391, 76598571]]	[[76582759, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000507252	[[76582784, 76582914], [76584026, 76584108], [76587114, 76587233], [76587565, 76587709], [76597773, 76597865]]	[[76582784, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000511868	[[76582792, 76582914], [76584026, 76584108], [76587114, 76587233], [76649459, 76649709]]	[[76582792, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000509561	[[76582858, 76582914], [76584026, 76584108], [76587114, 76587233], [76619981, 76620113], [76649459, 76649629]]	[[76582858, 76582914], [76584026, 76584108], [76587114, 76587209]]
ENST00000508510	[[76584026, 76584108], [76587114, 76587233], [76619981, 76620113], [76649239, 76649360], [76649459, 76649559]]	[[76584026, 76584108], [76587114, 76587209]]
ENST00000499709	[[76584035, 76584108], [76587114, 76587233], [76649239, 76649360], [76649459, 76649654]]	[[76584035, 76584108], [76587114, 76587209]]
ENST00000507701	[[76586698, 76587233], [76598391, 76598534]]	None
NM_012297	[[76567952, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598202, 76598343]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
NM_203505	[[76567952, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598391, 76598667]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76579166, 76579265], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]
NM_203504	[[76567952, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587233], [76598391, 76598667]]	[[76570613, 76570886], [76571521, 76571640], [76572212, 76572341], [76573822, 76573925], [76580249, 76580430], [76580951, 76581054], [76582107, 76582198], [76582740, 76582914], [76584026, 76584108], [76587114, 76587209]]