PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295470	[[83343716, 83346036], [83347189, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83351019]]	[[83347211, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350843]]
ENST00000349655	[[83345781, 83346036], [83347189, 83347282], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350594]]	[[83347211, 83347282], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350486]]
ENST00000602300	[[83345781, 83346036], [83346715, 83346820], [83347189, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350600]]	[[83347211, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350486]]
ENST00000502762	[[83345781, 83346036], [83346715, 83346820], [83347189, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83351294]]	[[83347211, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350843]]
ENST00000507721	[[83345783, 83347282], [83347615, 83347786], [83348342, 83348344]]	None
ENST00000514511	[[83346735, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83350400, 83350578]]	None
NR_003249	[[83343716, 83346036], [83346715, 83346820], [83347189, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83351378]]	None
NM_031372	[[83343716, 83346036], [83347189, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83351378]]	[[83347211, 83347282], [83347615, 83347786], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350843]]
NM_001207000	[[83343716, 83346036], [83347189, 83347282], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83351378]]	[[83347211, 83347282], [83348342, 83348457], [83348585, 83348717], [83349170, 83349332], [83349430, 83349599], [83350400, 83350843]]

Promoter

Chrom	Start	End	Description
chr4	83348378	83348400	CAGE_peak_6_at_HNRPDL_5end
chr4	83348645	83348673	CAGE_peak_7_at_HNRPDL_5end
chr4	83350555	83350566	CAGE_peak_2_at_HNRPDL_5end
chr4	83350580	83350600	CAGE_peak_1_at_HNRPDL_5end
chr4	83351005	83351014	CAGE_peak_19_at_HNRPDL_5end
chr4	83351029	83351036	CAGE_peak_21_at_HNRPDL_5end
chr4	83351107	83351121	CAGE_peak_8_at_HNRPDL_5end
chr4	83351124	83351222	CAGE_peak_4_at_HNRPDL_5end
chr4	83351344	83351417	CAGE_peak_5_at_HNRPDL_5end
chr4	83351529	83351540	CAGE_peak_10_at_HNRPDL_5end
chr4	83351556	83351628	CAGE_peak_3_at_HNRPDL_5end
chr4	83351863	83351886	CAGE_peak_16_at_HNRPDL_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I082394	82394488	82395559	0.63	[{'connected_gene': 'HNRNPDL', 'score': 11.76}, {'connected_gene': 'ENOPH1', 'score': 11.76}, {'connected_gene': 'HNRNPD', 'score': 11.7}, {'connected_gene': 'TMEM150C', 'score': 9.74}, {'connected_gene': 'IGBP1P4', 'score': 0.44}]
chr4	GH04I082380	82380428	82380577	0.6	[{'connected_gene': 'HNRNPDL', 'score': 11.45}, {'connected_gene': 'ENOPH1', 'score': 11.45}, {'connected_gene': 'HNRNPD', 'score': 0.44}, {'connected_gene': 'LOC101928963', 'score': 0.44}, {'connected_gene': 'IGBP1P4', 'score': 0.34}]
chr4	GH04I082367	82367627	82368566	0.49	[{'connected_gene': 'HNRNPDL', 'score': 11.42}, {'connected_gene': 'ENOPH1', 'score': 11.42}, {'connected_gene': 'PIR50483', 'score': 0.77}, {'connected_gene': 'HNRNPD', 'score': 0.44}, {'connected_gene': 'LOC101928963', 'score': 0.44}]
chr4	GH04I082366	82366790	82367598	0.46	[{'connected_gene': 'HNRNPDL', 'score': 11.42}, {'connected_gene': 'ENOPH1', 'score': 11.42}, {'connected_gene': 'ENSG00000273156', 'score': 4.99}, {'connected_gene': 'PIR50483', 'score': 0.77}, {'connected_gene': 'HNRNPD', 'score': 0.44}, {'connected_gene': 'LOC101928963', 'score': 0.44}]
chr4	GH04I082427	82427001	82431942	2.47	[{'connected_gene': 'HNRNPDL', 'score': 561.48}, {'connected_gene': 'ENOPH1', 'score': 555.76}, {'connected_gene': 'HNRNPD', 'score': 51.86}, {'connected_gene': 'ENSG00000202440', 'score': 0.31}, {'connected_gene': 'GC04M082403', 'score': 0.31}]
chr4	GH04I082360	82360040	82361408	0.74	[{'connected_gene': 'HNRNPDL', 'score': 11.7}, {'connected_gene': 'ENOPH1', 'score': 11.7}, {'connected_gene': 'ENSG00000273156', 'score': 5.89}, {'connected_gene': 'PIR50483', 'score': 0.77}, {'connected_gene': 'HNRNPD', 'score': 0.39}]
chr4	GH04I082796	82796333	82799522	2.1	[{'connected_gene': 'SCD5', 'score': 550.77}, {'connected_gene': 'HNRNPDL', 'score': 51.3}, {'connected_gene': 'THAP9-AS1', 'score': 42.32}, {'connected_gene': 'LOC101928963', 'score': 30.74}, {'connected_gene': 'HNRNPD', 'score': 30.28}, {'connected_gene': 'SEC31A', 'score': 10.35}, {'connected_gene': 'ENSG00000270842', 'score': 0.34}]
chr4	GH04I083033	83033922	83036652	2.11	[{'connected_gene': 'COPS4', 'score': 550.77}, {'connected_gene': 'GC04P083035', 'score': 550.77}, {'connected_gene': 'HNRNPD', 'score': 39.25}, {'connected_gene': 'HELQ', 'score': 25.8}, {'connected_gene': 'THAP9-AS1', 'score': 20.74}, {'connected_gene': 'ABRAXAS1', 'score': 19.05}, {'connected_gene': 'HNRNPDL', 'score': 12.77}, {'connected_gene': 'SEC31A', 'score': 10.63}]
chr4	GH04I083254	83254875	83261297	1.35	[{'connected_gene': 'LOC391674', 'score': 19.07}, {'connected_gene': 'HNRNPD', 'score': 16.09}, {'connected_gene': 'HNRNPDL', 'score': 15.74}, {'connected_gene': 'SEC31A', 'score': 13.4}, {'connected_gene': 'HELQ', 'score': 12.71}, {'connected_gene': 'THAP9-AS1', 'score': 11.04}, {'connected_gene': 'ABRAXAS1', 'score': 9.73}, {'connected_gene': 'PLAC8', 'score': 7.67}, {'connected_gene': 'PIR52005', 'score': 0.44}, {'connected_gene': 'GC04P083274', 'score': 0.37}, {'connected_gene': 'COQ2', 'score': 0.31}]
chr4	GH04I082425	82425467	82425790	0.63	[{'connected_gene': 'HNRNPD', 'score': 11.7}, {'connected_gene': 'HNRNPDL', 'score': 0.77}, {'connected_gene': 'ENSG00000202440', 'score': 0.34}, {'connected_gene': 'GC04M082403', 'score': 0.34}]
chr4	GH04I082426	82425262	82425461	0.51	[{'connected_gene': 'HNRNPD', 'score': 11.7}, {'connected_gene': 'HNRNPDL', 'score': 0.44}, {'connected_gene': 'ENSG00000202440', 'score': 0.34}, {'connected_gene': 'GC04M082403', 'score': 0.34}]
chr4	GH04I082423	82423021	82424614	0.65	[{'connected_gene': 'HNRNPD', 'score': 11.96}, {'connected_gene': 'ENOPH1', 'score': 5.31}, {'connected_gene': 'HNRNPDL', 'score': 0.44}, {'connected_gene': 'ENSG00000202440', 'score': 0.34}, {'connected_gene': 'GC04M082403', 'score': 0.34}]
chr4	GH04I082370	82370936	82376001	2.33	[{'connected_gene': 'HNRNPD', 'score': 580.64}, {'connected_gene': 'LOC101928963', 'score': 556.13}, {'connected_gene': 'HNRNPDL', 'score': 27.44}, {'connected_gene': 'THAP9-AS1', 'score': 19.9}, {'connected_gene': 'SEC31A', 'score': 13.38}, {'connected_gene': 'ENOPH1', 'score': 11.72}, {'connected_gene': 'TMEM150C', 'score': 4.4}, {'connected_gene': 'PIR50483', 'score': 0.44}]
chr4	GH04I081503	81503771	81507058	1.39	[{'connected_gene': 'RASGEF1B', 'score': 30.33}, {'connected_gene': 'HNRNPD', 'score': 21.27}, {'connected_gene': 'HNRNPDL', 'score': 16.11}, {'connected_gene': 'LOC105377306', 'score': 0.44}, {'connected_gene': 'GC04M081523', 'score': 0.23}]
chr4	GH04I082766	82766494	82770029	0.31	[{'connected_gene': 'GC04M082767', 'score': 550.77}, {'connected_gene': 'HNRNPDL', 'score': 10.36}, {'connected_gene': 'MIR575', 'score': 0.39}, {'connected_gene': 'SCD5', 'score': 0.29}]
chr4	GH04I082363	82363139	82364803	0.54	[{'connected_gene': 'PIR50483', 'score': 550.77}, {'connected_gene': 'HNRNPDL', 'score': 11.7}, {'connected_gene': 'ENOPH1', 'score': 11.7}, {'connected_gene': 'ENSG00000273156', 'score': 5.94}, {'connected_gene': 'HNRNPD', 'score': 0.39}, {'connected_gene': 'LOC101928963', 'score': 0.39}]
chr4	GH04I082361	82361654	82362966	0.49	[{'connected_gene': 'PIR50483', 'score': 550.77}, {'connected_gene': 'HNRNPDL', 'score': 11.7}, {'connected_gene': 'ENOPH1', 'score': 11.7}, {'connected_gene': 'ENSG00000273156', 'score': 5.01}, {'connected_gene': 'HNRNPD', 'score': 0.39}]
chr4	GH04I082416	82416088	82416237	0.52	[{'connected_gene': 'ENSG00000202440', 'score': 0.39}, {'connected_gene': 'HNRNPDL', 'score': 0.39}, {'connected_gene': 'GC04M082403', 'score': 0.39}]