PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371021	[[99079021, 99081672]]	[[99079210, 99080050]]
ENST00000490980	[[99080497, 99080991], [99081441, 99081580]]	None
NM_005479	[[99079021, 99081672]]	[[99079210, 99080050]]

Promoter

Chrom	Start	End	Description
chr10	99079008	99079060	CAGE_peak_1_at_FRAT1_5end
chr10	99079268	99079308	CAGE_peak_2_at_FRAT1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I097313	97313980	97315483	0.38	[{'connected_gene': 'ARHGAP19', 'score': 24.46}, {'connected_gene': 'SLIT1', 'score': 16.71}, {'connected_gene': 'RRP12', 'score': 10.67}, {'connected_gene': 'RPL12P27', 'score': 5.6}, {'connected_gene': 'FRAT1', 'score': 0.77}]
chr10	GH10I096972	96972679	96975658	0.54	[{'connected_gene': 'ARHGAP19', 'score': 8.5}, {'connected_gene': 'FRAT1', 'score': 5.29}, {'connected_gene': 'GC10M096966', 'score': 0.44}, {'connected_gene': 'GC10P096994', 'score': 0.37}, {'connected_gene': 'LCOR', 'score': 0.11}]
chr10	GH10I096975	96975932	96977116	0.31	[{'connected_gene': 'ARHGAP19', 'score': 8.27}, {'connected_gene': 'FRAT1', 'score': 5.29}, {'connected_gene': 'GC10M096966', 'score': 0.44}, {'connected_gene': 'GC10P096994', 'score': 0.37}, {'connected_gene': 'LCOR', 'score': 0.11}]
chr10	GH10I096889	96889296	96891467	0.91	[{'connected_gene': 'LCOR', 'score': 11.85}, {'connected_gene': 'MIR607', 'score': 11.84}, {'connected_gene': 'PIK3AP1', 'score': 10.71}, {'connected_gene': 'FRAT1', 'score': 5.28}, {'connected_gene': 'HMGN2P35', 'score': 0.31}, {'connected_gene': 'LOC102723665', 'score': 0.22}]
chr10	GH10I096860	96860305	96861469	0.6	[{'connected_gene': 'LCOR', 'score': 12.76}, {'connected_gene': 'MIR607', 'score': 12.74}, {'connected_gene': 'SLIT1-AS1', 'score': 10.09}, {'connected_gene': 'SLIT1', 'score': 10.07}, {'connected_gene': 'FRAT1', 'score': 5.03}, {'connected_gene': 'LOC102723665', 'score': 0.31}, {'connected_gene': 'HMGN2P35', 'score': 0.22}]
chr10	GH10I096863	96863420	96866563	1.15	[{'connected_gene': 'LCOR', 'score': 12.3}, {'connected_gene': 'MIR607', 'score': 12.28}, {'connected_gene': 'FRAT1', 'score': 5.07}, {'connected_gene': 'LOC102723665', 'score': 0.29}, {'connected_gene': 'HMGN2P35', 'score': 0.23}]
chr10	GH10I097326	97326753	97330580	1.4	[{'connected_gene': 'SLIT1', 'score': 15.22}, {'connected_gene': 'LOC105378448', 'score': 0.44}, {'connected_gene': 'FRAT1', 'score': 0.44}]
chr10	GH10I097323	97323095	97324123	0.31	[{'connected_gene': 'SLIT1', 'score': 16.18}, {'connected_gene': 'FRAT1', 'score': 0.77}, {'connected_gene': 'LOC105378448', 'score': 0.39}]
chr10	GH10I097199	97198926	97199843	0.2	[{'connected_gene': 'SLIT1', 'score': 10.83}, {'connected_gene': 'FRAT1', 'score': 4.73}, {'connected_gene': 'PIR51669', 'score': 0.77}, {'connected_gene': 'LOC105378447', 'score': 0.37}, {'connected_gene': 'ARHGAP19-SLIT1', 'score': 0.16}]
chr10	GH10I097569	97569965	97576477	1.86	[{'connected_gene': 'ANKRD2', 'score': 556.73}, {'connected_gene': 'MMS19', 'score': 20.83}, {'connected_gene': 'R3HCC1L', 'score': 15.3}, {'connected_gene': 'HPS1', 'score': 13.67}, {'connected_gene': 'EXOSC1', 'score': 11.56}, {'connected_gene': 'LOXL4', 'score': 11.46}, {'connected_gene': 'LCOR', 'score': 10.93}, {'connected_gene': 'RPL13AP5', 'score': 10.91}, {'connected_gene': 'MARVELD1', 'score': 10.22}, {'connected_gene': 'ENSG00000230928', 'score': 9.74}, {'connected_gene': 'MORN4', 'score': 7.47}, {'connected_gene': 'PI4K2A', 'score': 5.91}, {'connected_gene': 'HOGA1', 'score': 5.09}, {'connected_gene': 'FRAT1', 'score': 5.06}, {'connected_gene': 'SLIT1', 'score': 5.06}, {'connected_gene': 'UBTD1', 'score': 4.93}, {'connected_gene': 'RRP12', 'score': 4.45}, {'connected_gene': 'GC10M097562', 'score': 0.11}]
chr10	GH10I097405	97405602	97409373	1.68	[{'connected_gene': 'FRAT2', 'score': 38.71}, {'connected_gene': 'RRP12', 'score': 38.21}, {'connected_gene': 'FRAT1', 'score': 22.34}, {'connected_gene': 'ARHGAP19', 'score': 21.03}, {'connected_gene': 'ZDHHC16', 'score': 12.56}, {'connected_gene': 'EXOSC1', 'score': 12.56}, {'connected_gene': 'MMS19', 'score': 10.45}, {'connected_gene': 'UBTD1', 'score': 10.45}, {'connected_gene': 'ENSG00000249967', 'score': 10.11}, {'connected_gene': 'HOGA1', 'score': 10.11}, {'connected_gene': 'C10orf62', 'score': 10.1}, {'connected_gene': 'PI4K2A', 'score': 10.09}, {'connected_gene': 'ZFYVE27', 'score': 3.63}, {'connected_gene': 'LCOR', 'score': 1.67}, {'connected_gene': 'ENSG00000231970', 'score': 0.44}, {'connected_gene': 'ENSG00000200737', 'score': 0.39}, {'connected_gene': 'GC10M097424', 'score': 0.39}, {'connected_gene': 'LOC644215', 'score': 0.37}]
chr10	GH10I097353	97353402	97354999	0.8	[{'connected_gene': 'RRP12', 'score': 32.82}, {'connected_gene': 'ARHGAP19', 'score': 24.28}, {'connected_gene': 'PI4K2A', 'score': 11.64}, {'connected_gene': 'SLIT1', 'score': 10.08}, {'connected_gene': 'SLIT1-AS1', 'score': 10.05}, {'connected_gene': 'ENSG00000249967', 'score': 9.76}, {'connected_gene': 'HOGA1', 'score': 9.76}, {'connected_gene': 'C10orf62', 'score': 9.75}, {'connected_gene': 'FRAT1', 'score': 8.16}, {'connected_gene': 'FRAT2', 'score': 7.97}, {'connected_gene': 'ZFYVE27', 'score': 4.51}, {'connected_gene': 'LCOR', 'score': 2.75}, {'connected_gene': 'RPL34P20', 'score': 0.28}]
chr10	GH10I097412	97412498	97415636	1.54	[{'connected_gene': 'RRP12', 'score': 22.23}, {'connected_gene': 'EXOSC1', 'score': 12.54}, {'connected_gene': 'ZDHHC16', 'score': 12.54}, {'connected_gene': 'MMS19', 'score': 10.39}, {'connected_gene': 'UBTD1', 'score': 10.39}, {'connected_gene': 'PGAM1', 'score': 8.6}, {'connected_gene': 'LCOR', 'score': 7.57}, {'connected_gene': 'ZFYVE27', 'score': 6.77}, {'connected_gene': 'ARHGAP19', 'score': 5.94}, {'connected_gene': 'FRAT1', 'score': 1.62}, {'connected_gene': 'FRAT2', 'score': 1.46}, {'connected_gene': 'PI4K2A', 'score': 1.39}, {'connected_gene': 'GC10M097424', 'score': 0.44}, {'connected_gene': 'ENSG00000200737', 'score': 0.44}, {'connected_gene': 'ENSG00000231970', 'score': 0.39}, {'connected_gene': 'LOC644215', 'score': 0.39}]
chr10	GH10I097331	97331217	97336082	2.27	[{'connected_gene': 'LOC105378448', 'score': 550.77}, {'connected_gene': 'FRAT2', 'score': 550.77}, {'connected_gene': 'EXOSC1', 'score': 28.46}, {'connected_gene': 'RPL13AP5', 'score': 23.93}, {'connected_gene': 'NPM1P26', 'score': 23.33}, {'connected_gene': 'R3HCC1L', 'score': 20.94}, {'connected_gene': 'LOXL4', 'score': 20.23}, {'connected_gene': 'ENSG00000230928', 'score': 19.77}, {'connected_gene': 'TM9SF3', 'score': 19.33}, {'connected_gene': 'SLIT1', 'score': 16.59}, {'connected_gene': 'MARVELD1', 'score': 14.97}, {'connected_gene': 'ARHGAP19', 'score': 13.55}, {'connected_gene': 'LCOR', 'score': 10.67}, {'connected_gene': 'ZFYVE27', 'score': 9.75}, {'connected_gene': 'FRAT1', 'score': 0.39}]
chr10	GH10I096978	96978511	96979372	0.67	[{'connected_gene': 'FRAT1', 'score': 5.29}, {'connected_gene': 'GC10P096994', 'score': 0.39}, {'connected_gene': 'GC10M096966', 'score': 0.39}, {'connected_gene': 'LCOR', 'score': 0.11}]
chr10	GH10I097318	97318158	97322198	2.26	[{'connected_gene': 'FRAT1', 'score': 550.77}, {'connected_gene': 'RPL13AP5', 'score': 15.06}, {'connected_gene': 'ARHGAP19', 'score': 13.82}, {'connected_gene': 'NPM1P26', 'score': 13.46}, {'connected_gene': 'MORN4', 'score': 13.02}, {'connected_gene': 'SLIT1', 'score': 12.68}, {'connected_gene': 'EXOSC1', 'score': 11.57}, {'connected_gene': 'ENSG00000230928', 'score': 10.92}, {'connected_gene': 'LCOR', 'score': 10.68}, {'connected_gene': 'LOXL4', 'score': 10.04}, {'connected_gene': 'R3HCC1L', 'score': 9.98}, {'connected_gene': 'TM9SF3', 'score': 9.95}, {'connected_gene': 'LOC105378448', 'score': 0.39}]
chr10	GH10I097200	97200361	97200658	0.31	[{'connected_gene': 'FRAT1', 'score': 5.38}, {'connected_gene': 'PIR51669', 'score': 0.77}, {'connected_gene': 'LOC105378447', 'score': 0.37}, {'connected_gene': 'ARHGAP19-SLIT1', 'score': 0.16}]