PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000474805	[[50570948, 50570986], [50571802, 50571899], [50594349, 50594617]]	None
ENST00000478111	[[50571154, 50571267], [50571802, 50571899], [50594349, 50594617]]	None
ENST00000442421	[[50570023, 50570111], [50571802, 50571899], [50575130, 50575244], [50586070, 50586463]]	[[50586076, 50586463]]
ENST00000378183	[[50570638, 50570986], [50571802, 50571899], [50586070, 50586876]]	[[50586076, 50586876]]
ENST00000420995	[[50571154, 50571267], [50571802, 50571899], [50586070, 50588467]]	[[50586076, 50587300]]
ENST00000378182	[[50571167, 50571899], [50586070, 50592587]]	[[50586076, 50587300]]
ENST00000356017	[[50571172, 50571352], [50571802, 50571899], [50575130, 50575244], [50586070, 50587316]]	[[50575241, 50575244], [50586070, 50587300]]
ENST00000457662	[[50571194, 50571352], [50571802, 50571899], [50586070, 50587304]]	[[50586076, 50587300]]
ENST00000298772	[[50575241, 50575244], [50586070, 50587305]]	[[50575241, 50575244], [50586070, 50587300]]
NM_005798	[[50571142, 50571267], [50571802, 50571899], [50586070, 50592603]]	[[50586076, 50587300]]
NM_052811	[[50571142, 50571352], [50571802, 50571899], [50586070, 50592603]]	[[50586076, 50587300]]
NM_001007278	[[50571142, 50571352], [50571802, 50571899], [50575130, 50575244], [50586070, 50592603]]	[[50575241, 50575244], [50586070, 50587300]]
NM_213590	[[50571142, 50571899], [50586070, 50592603]]	[[50586076, 50587300]]

Promoter

Chrom	Start	End	Description
chr13	50570019	50570028	CAGE_peak_10_at_TRIM13_5end
chr13	50570882	50570891	CAGE_peak_7_at_TRIM13_5end
chr13	50570892	50570926	CAGE_peak_3_at_TRIM13_5end
chr13	50571160	50571229	CAGE_peak_1_at_TRIM13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I049689	49689666	49694057	1.99	[{'connected_gene': 'EBPL', 'score': 581.38}, {'connected_gene': 'SETDB2', 'score': 15.5}, {'connected_gene': 'TRIM13', 'score': 12.89}, {'connected_gene': 'KCNRG', 'score': 11.54}, {'connected_gene': 'RCBTB1', 'score': 4.68}, {'connected_gene': 'GC13P049698', 'score': 0.44}]
chr13	GH13I049856	49856871	49860394	1.13	[{'connected_gene': 'EBPL', 'score': 16.26}, {'connected_gene': 'SPRYD7', 'score': 7.86}, {'connected_gene': 'DLEU1', 'score': 6.09}, {'connected_gene': 'CTAGE10P', 'score': 5.03}, {'connected_gene': 'TRIM13', 'score': 4.52}, {'connected_gene': 'RNY4P30', 'score': 0.29}, {'connected_gene': 'KPNA3', 'score': 0.2}]
chr13	GH13I049820	49820332	49821617	0.75	[{'connected_gene': 'EBPL', 'score': 32.78}, {'connected_gene': 'KPNA3', 'score': 11.91}, {'connected_gene': 'RCBTB1', 'score': 5.09}, {'connected_gene': 'TRIM13', 'score': 4.68}, {'connected_gene': 'RNY4P30', 'score': 0.2}]
chr13	GH13I049292	49292345	49293390	0.84	[{'connected_gene': 'SETDB2', 'score': 29.13}, {'connected_gene': 'TRIM13', 'score': 10.91}, {'connected_gene': 'CDADC1', 'score': 10.63}, {'connected_gene': 'CAB39L', 'score': 4.29}, {'connected_gene': 'GC13P049296', 'score': 0.77}, {'connected_gene': 'GC13M049248', 'score': 0.26}]
chr13	GH13I050395	50395901	50396594	0.43	[{'connected_gene': 'SETDB2', 'score': 15.46}, {'connected_gene': 'TRIM13', 'score': 12.88}, {'connected_gene': 'SERPINE3', 'score': 12.2}, {'connected_gene': 'RPL34P26', 'score': 11.87}, {'connected_gene': 'KCNRG', 'score': 11.53}, {'connected_gene': 'GC13P050401', 'score': 0.77}, {'connected_gene': 'GC13P050390', 'score': 0.44}, {'connected_gene': 'DLEU1', 'score': 0.06}]
chr13	GH13I049847	49847601	49848579	1.11	[{'connected_gene': 'SETDB2', 'score': 15.01}, {'connected_gene': 'TRIM13', 'score': 10.03}, {'connected_gene': 'DLEU1', 'score': 6.25}, {'connected_gene': 'EBPL', 'score': 5.04}, {'connected_gene': 'RNY4P30', 'score': 0.26}, {'connected_gene': 'KPNA3', 'score': 0.22}]
chr13	GH13I050115	50115335	50115839	0.38	[{'connected_gene': 'SETDB2', 'score': 15.46}, {'connected_gene': 'TRIM13', 'score': 12.96}, {'connected_gene': 'DLEU1', 'score': 12.37}, {'connected_gene': 'KCNRG', 'score': 11.63}, {'connected_gene': 'RNASEH2B-AS1', 'score': 10.89}, {'connected_gene': 'RNASEH2B', 'score': 10.89}, {'connected_gene': 'KPNA3', 'score': 9.26}, {'connected_gene': 'ENSG00000273541', 'score': 0.39}, {'connected_gene': 'DLEU2', 'score': 0.39}]
chr13	GH13I050207	50207899	50210141	1.37	[{'connected_gene': 'SETDB2', 'score': 14.99}, {'connected_gene': 'RPL34P26', 'score': 10.57}, {'connected_gene': 'RNASEH2B', 'score': 10.28}, {'connected_gene': 'TRIM13', 'score': 10.0}, {'connected_gene': 'DLEU7', 'score': 9.63}, {'connected_gene': 'EBPL', 'score': 4.16}, {'connected_gene': 'GC13P050221', 'score': 0.39}, {'connected_gene': 'GC13P050185', 'score': 0.34}, {'connected_gene': 'DLEU1', 'score': 0.13}]
chr13	GH13I050908	50908109	50918118	2.69	[{'connected_gene': 'RNASEH2B', 'score': 617.54}, {'connected_gene': 'RNASEH2B-AS1', 'score': 27.57}, {'connected_gene': 'DLEU7-AS1', 'score': 10.78}, {'connected_gene': 'DLEU7', 'score': 10.69}, {'connected_gene': 'KCNRG', 'score': 10.44}, {'connected_gene': 'SERPINE3', 'score': 10.23}, {'connected_gene': 'TRIM13', 'score': 10.11}, {'connected_gene': 'RPS4XP16', 'score': 9.93}, {'connected_gene': 'INTS6', 'score': 4.74}, {'connected_gene': 'GC13M050919', 'score': 0.39}]
chr13	GH13I049934	49934830	49940676	2.25	[{'connected_gene': 'SPRYD7', 'score': 550.22}, {'connected_gene': 'TRIM13', 'score': 25.97}, {'connected_gene': 'KCNRG', 'score': 15.58}, {'connected_gene': 'SETDB2', 'score': 13.34}, {'connected_gene': 'EBPL', 'score': 9.84}, {'connected_gene': 'DLEU1', 'score': 7.65}, {'connected_gene': 'CTAGE10P', 'score': 6.9}, {'connected_gene': 'GC13P049951', 'score': 0.39}, {'connected_gene': 'GC13M049909', 'score': 0.31}, {'connected_gene': 'RNY4P9', 'score': 0.31}]
chr13	GH13I049494	49494389	49500998	2.39	[{'connected_gene': 'PHF11', 'score': 564.24}, {'connected_gene': 'SETDB2', 'score': 27.92}, {'connected_gene': 'TRIM13', 'score': 12.87}, {'connected_gene': 'KCNRG', 'score': 11.51}, {'connected_gene': 'EBPL', 'score': 10.61}, {'connected_gene': 'ARL11', 'score': 5.5}, {'connected_gene': 'RCBTB1', 'score': 0.17}, {'connected_gene': 'GC13P049390', 'score': 0.14}]
chr13	GH13I050023	50023340	50023674	0.31	[{'connected_gene': 'MIR16-1', 'score': 12.01}, {'connected_gene': 'TRIM13', 'score': 1.65}, {'connected_gene': 'RCBTB1', 'score': 1.24}, {'connected_gene': 'KCNRG', 'score': 0.44}, {'connected_gene': 'GC13M050020', 'score': 0.39}, {'connected_gene': 'DLEU2', 'score': 0.15}]
chr13	GH13I049219	49219711	49221452	1.41	[{'connected_gene': 'MLNR', 'score': 550.77}, {'connected_gene': 'SETDB2', 'score': 15.51}, {'connected_gene': 'TRIM13', 'score': 12.86}, {'connected_gene': 'KCNRG', 'score': 11.51}, {'connected_gene': 'PPP1R26P1', 'score': 10.66}, {'connected_gene': 'FNDC3A', 'score': 4.94}, {'connected_gene': 'THAP12P10', 'score': 0.39}, {'connected_gene': 'LOC105370203', 'score': 0.31}]
chr13	GH13I050016	50016545	50016554	0.46	[{'connected_gene': 'KCNRG', 'score': 550.77}, {'connected_gene': 'MIR16-1', 'score': 11.65}, {'connected_gene': 'GC13M050020', 'score': 0.37}, {'connected_gene': 'TRIM13', 'score': 0.34}, {'connected_gene': 'DLEU2', 'score': 0.14}]
chr13	GH13I050017	50015302	50016094	0.79	[{'connected_gene': 'KCNRG', 'score': 550.77}, {'connected_gene': 'MIR16-1', 'score': 11.65}, {'connected_gene': 'TRIM13', 'score': 0.37}, {'connected_gene': 'GC13M050020', 'score': 0.37}, {'connected_gene': 'DLEU2', 'score': 0.14}]
chr13	GH13I050051	50051775	50057026	0.57	[{'connected_gene': 'KCNRG', 'score': 12.81}, {'connected_gene': 'DLEU1', 'score': 11.83}, {'connected_gene': 'EBPL', 'score': 8.5}, {'connected_gene': 'TRIM13', 'score': 4.47}, {'connected_gene': 'RNASEH2B', 'score': 4.23}, {'connected_gene': 'GC13M050053', 'score': 0.77}, {'connected_gene': 'ENSG00000273612', 'score': 0.39}, {'connected_gene': 'DLEU2', 'score': 0.19}]
chr13	GH13I050015	50015121	50015180	0.61	[{'connected_gene': 'KCNRG', 'score': 550.77}, {'connected_gene': 'TRIM13', 'score': 0.37}, {'connected_gene': 'MIR3613', 'score': 0.37}, {'connected_gene': 'DLEU2', 'score': 0.14}]
chr13	GH13I050121	50121689	50131823	2.28	[{'connected_gene': 'DLEU2', 'score': 555.7}, {'connected_gene': 'ENSG00000274270', 'score': 550.77}, {'connected_gene': 'SETDB2', 'score': 51.06}, {'connected_gene': 'TRIM13', 'score': 34.63}, {'connected_gene': 'KCNRG', 'score': 26.25}, {'connected_gene': 'DLEU1', 'score': 25.23}, {'connected_gene': 'RNASEH2B-AS1', 'score': 23.01}, {'connected_gene': 'CTAGE10P', 'score': 13.18}, {'connected_gene': 'RNASEH2B', 'score': 11.42}, {'connected_gene': 'EBPL', 'score': 9.37}, {'connected_gene': 'ARL11', 'score': 1.93}, {'connected_gene': 'ST13P4', 'score': 0.25}]
chr13	GH13I049371	49371985	49372194	0.76	[{'connected_gene': 'TRIM13', 'score': 10.98}, {'connected_gene': 'SETDB2', 'score': 10.23}, {'connected_gene': 'KCNRG', 'score': 10.18}, {'connected_gene': 'GC13P049390', 'score': 0.37}, {'connected_gene': 'CAB39L', 'score': 0.19}, {'connected_gene': 'GC13P049296', 'score': 0.18}]
chr13	GH13I049300	49300785	49301800	1.05	[{'connected_gene': 'TRIM13', 'score': 10.91}, {'connected_gene': 'SETDB2', 'score': 10.19}, {'connected_gene': 'GC13P049296', 'score': 0.77}, {'connected_gene': 'GC13P049390', 'score': 0.17}]
chr13	GH13I049995	49995318	49999686	2.01	[{'connected_gene': 'TRIM13', 'score': 560.54}, {'connected_gene': 'SPRYD7', 'score': 556.41}, {'connected_gene': 'MIR3613', 'score': 550.77}, {'connected_gene': 'DLEU1', 'score': 10.07}, {'connected_gene': 'EBPL', 'score': 8.41}, {'connected_gene': 'CTAGE10P', 'score': 5.97}, {'connected_gene': 'RNASEH2B', 'score': 4.09}, {'connected_gene': 'KCNRG', 'score': 0.37}, {'connected_gene': 'DLEU2', 'score': 0.13}]
chr13	GH13I049927	49927584	49928330	0.2	[{'connected_gene': 'TRIM13', 'score': 9.92}, {'connected_gene': 'RNY4P9', 'score': 0.37}, {'connected_gene': 'GC13M049909', 'score': 0.37}, {'connected_gene': 'GC13P049951', 'score': 0.34}, {'connected_gene': 'SPRYD7', 'score': 0.2}]
chr13	GH13I050140	50140601	50142600	0.97	[{'connected_gene': 'RPL34P26', 'score': 10.47}, {'connected_gene': 'EBPL', 'score': 8.2}, {'connected_gene': 'DLEU1', 'score': 5.45}, {'connected_gene': 'TRIM13', 'score': 4.32}, {'connected_gene': 'ENSG00000274270', 'score': 0.37}, {'connected_gene': 'ST13P4', 'score': 0.29}]
chr13	GH13I049981	49981571	49981725	0.22	[{'connected_gene': 'GC13P049980', 'score': 550.77}, {'connected_gene': 'KCNRG', 'score': 11.34}, {'connected_gene': 'SPRYD7', 'score': 0.39}, {'connected_gene': 'TRIM13', 'score': 0.39}]
chr13	GH13I049951	49951446	49955979	0.6	[{'connected_gene': 'GC13P049953', 'score': 550.77}, {'connected_gene': 'GC13P049954', 'score': 550.77}, {'connected_gene': 'GC13P049951', 'score': 550.77}, {'connected_gene': 'GC13P049955', 'score': 550.77}, {'connected_gene': 'DLEU1', 'score': 11.55}, {'connected_gene': 'TRIM13', 'score': 10.27}, {'connected_gene': 'KPNA3', 'score': 10.2}, {'connected_gene': 'EBPL', 'score': 8.47}, {'connected_gene': 'SPRYD7', 'score': 0.26}]
chr13	GH13I050075	50075404	50084477	1.77	[{'connected_gene': 'ENSG00000275559', 'score': 550.77}, {'connected_gene': 'TRIM13', 'score': 19.45}, {'connected_gene': 'SETDB2', 'score': 18.14}, {'connected_gene': 'CTAGE10P', 'score': 13.33}, {'connected_gene': 'DLEU1', 'score': 13.16}, {'connected_gene': 'KCNRG', 'score': 11.3}, {'connected_gene': 'EBPL', 'score': 10.69}, {'connected_gene': 'ENSG00000277752', 'score': 0.77}, {'connected_gene': 'GC13P050084', 'score': 0.77}, {'connected_gene': 'ENSG00000276089', 'score': 0.77}, {'connected_gene': 'GC13P050070', 'score': 0.39}, {'connected_gene': 'DLEU2', 'score': 0.25}]