PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000468573	[[239549864, 239550527], [239656008, 239656107], [239708940, 239709049], [239795523, 239795586], [239841485, 239841588], [239882095, 239882199], [239990152, 239990381], [239990551, 239990678], [240049388, 240049896]]	None
ENST00000492335	[[239550219, 239550527], [239656008, 239656107], [239708940, 239709049], [239769304, 239769507]]	None
ENST00000481779	[[239571519, 239571549], [239656008, 239656107], [239708940, 239709912]]	None
ENST00000255380	[[239792372, 239792839], [239795523, 239795586], [239841485, 239841588], [239990551, 239990678], [240070732, 240078750]]	[[240070751, 240072524]]
ENST00000487470	[[239795550, 239795576], [239841485, 239841588], [239866497, 239866949]]	None
ENST00000448020	[[239882842, 239882954], [239990551, 239990678], [240070732, 240071080]]	[[240070751, 240071080]]
NM_001347716	[[239550229, 239550527], [239656008, 239656107], [239708940, 239709049], [239795523, 239795586], [239841485, 239841588], [239990152, 239990381], [239990551, 239990678], [240070732, 240078750]]	[[240070751, 240072524]]
NM_000740	[[239792372, 239792839], [239795523, 239795586], [239841485, 239841588], [239990551, 239990678], [240070732, 240078750]]	[[240070751, 240072524]]

Promoter

Chrom	Start	End	Description
chr1	239549856	239549887	CAGE_peak_1_at_CHRM3_5end
chr1	239549889	239549900	CAGE_peak_5_at_CHRM3_5end
chr1	239549933	239549960	CAGE_peak_2_at_CHRM3_5end
chr1	239549963	239549974	CAGE_peak_6_at_CHRM3_5end
chr1	239550009	239550033	CAGE_peak_4_at_CHRM3_5end
chr1	239550209	239550229	CAGE_peak_8_at_CHRM3_5end
chr1	239550243	239550304	CAGE_peak_3_at_CHRM3_5end
chr1	239571457	239571466	CAGE_peak_18_at_CHRM3_5end
chr1	239571481	239571493	CAGE_peak_7_at_CHRM3_5end
chr1	239882497	239882503	CAGE_peak_13_at_CHRM3_5end
chr1	239882791	239882794	CAGE_peak_25_at_CHRM3_5end
chr1	239882823	239882838	CAGE_peak_14_at_CHRM3_5end
chr1	239882842	239882850	CAGE_peak_22_at_CHRM3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I239353	239353199	239354290	0.2	[{'connected_gene': 'CHRM3', 'score': 12.0}, {'connected_gene': 'LOC105373223', 'score': 0.15}]
chr1	GH01I239242	239242913	239243452	0.38	[{'connected_gene': 'CHRM3', 'score': 10.65}, {'connected_gene': 'LOC105373223', 'score': 0.39}, {'connected_gene': 'GC01P239202', 'score': 0.26}]
chr1	GH01I239311	239311477	239311487	0.22	[{'connected_gene': 'CHRM3', 'score': 10.66}, {'connected_gene': 'LOC105373223', 'score': 0.22}, {'connected_gene': 'GC01P239202', 'score': 0.14}]
chr1	GH01I239368	239368076	239369822	0.31	[{'connected_gene': 'CHRM3', 'score': 0.37}, {'connected_gene': 'LOC105373223', 'score': 0.14}]
chr1	GH01I239337	239337840	239338760	0.2	[{'connected_gene': 'CHRM3', 'score': 11.71}, {'connected_gene': 'LOC105373223', 'score': 0.18}, {'connected_gene': 'GC01P239202', 'score': 0.12}]
chr1	GH01I239315	239315220	239316237	0.46	[{'connected_gene': 'CHRM3', 'score': 11.65}, {'connected_gene': 'LOC105373223', 'score': 0.21}, {'connected_gene': 'GC01P239202', 'score': 0.14}]
chr1	GH01I239361	239361389	239361775	0.4	[{'connected_gene': 'CHRM3', 'score': 17.36}, {'connected_gene': 'LOC105373223', 'score': 0.14}]
chr1	GH01I239809	239809472	239811743	0.52	[{'connected_gene': 'CHRM3', 'score': 11.03}, {'connected_gene': 'CHRM3-AS2', 'score': 0.18}, {'connected_gene': 'CHRM3-AS1', 'score': 0.17}]
chr1	GH01I239814	239814102	239815039	0.94	[{'connected_gene': 'CHRM3', 'score': 11.03}, {'connected_gene': 'CHRM3-AS2', 'score': 0.18}, {'connected_gene': 'CHRM3-AS1', 'score': 0.17}]
chr1	GH01I239547	239547521	239548656	0.2	[{'connected_gene': 'CHRM3', 'score': 10.51}, {'connected_gene': 'GC01P239578', 'score': 0.29}, {'connected_gene': 'GC01M239442', 'score': 0.28}]
chr1	GH01I239386	239386029	239388260	0.76	[{'connected_gene': 'CHRM3', 'score': 550.77}, {'connected_gene': 'GC01M239442', 'score': 0.13}]
chr1	GH01I239893	239893481	239893630	0.49	[{'connected_gene': 'CHRM3-AS1', 'score': 0.44}, {'connected_gene': 'CHRM3-AS2', 'score': 0.1}, {'connected_gene': 'CHRM3', 'score': 0.03}]
chr1	GH01I239897	239897801	239898475	0.89	[{'connected_gene': 'CHRM3-AS1', 'score': 550.77}, {'connected_gene': 'CHRM3-AS2', 'score': 0.1}, {'connected_gene': 'CHRM3', 'score': 0.03}]
chr1	GH01I239815	239815701	239817818	0.9	[{'connected_gene': 'CHRM3-AS1', 'score': 12.68}, {'connected_gene': 'CHRM3-AS2', 'score': 0.17}, {'connected_gene': 'CHRM3', 'score': 0.04}]
chr1	GH01I239717	239717158	239722421	0.96	[{'connected_gene': 'CHRM3-AS2', 'score': 15.24}, {'connected_gene': 'CHRM3', 'score': 11.33}, {'connected_gene': 'GC01P239706', 'score': 0.39}]
chr1	GH01I239805	239805801	239806200	0.38	[{'connected_gene': 'CHRM3-AS2', 'score': 0.18}, {'connected_gene': 'CHRM3-AS1', 'score': 0.16}, {'connected_gene': 'CHRM3', 'score': 0.05}]
chr1	GH01I239856	239856159	239858788	0.63	[{'connected_gene': 'CHRM3-AS2', 'score': 4.79}, {'connected_gene': 'CHRM3-AS1', 'score': 0.26}, {'connected_gene': 'CHRM3', 'score': 0.04}]
chr1	GH01I239730	239730428	239730736	0.27	[{'connected_gene': 'CHRM3-AS2', 'score': 550.77}, {'connected_gene': 'CHRM3-AS1', 'score': 0.1}, {'connected_gene': 'CHRM3', 'score': 0.05}]
chr1	GH01I239685	239685917	239686627	0.31	[{'connected_gene': 'GC01P239706', 'score': 0.34}, {'connected_gene': 'GC01P239659', 'score': 0.31}, {'connected_gene': 'CHRM3', 'score': 0.06}]
chr1	GH01I239910	239910379	239919350	0.63	[{'connected_gene': 'GC01P239911', 'score': 0.77}, {'connected_gene': 'GC01P239936', 'score': 0.34}, {'connected_gene': 'LOC105373224', 'score': 0.28}, {'connected_gene': 'CHRM3', 'score': 0.03}]