PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361820	[[104331634, 104335795], [104340049, 104340126], [104341477, 104341642], [104375657, 104375809], [104385599, 104385715], [104390537, 104390683], [104432341, 104433389], [104448877, 104449482], [104499562, 104500862]]	[[104335455, 104335795], [104340049, 104340126], [104341477, 104341642], [104375657, 104375809], [104385599, 104385715], [104390537, 104390683], [104432341, 104433389], [104448877, 104449482], [104499562, 104500261]]
ENST00000479772	[[104363130, 104363398], [104365233, 104365316], [104375657, 104375804]]	None
NM_133445	[[104331633, 104335795], [104340049, 104340126], [104341477, 104341642], [104375657, 104375809], [104385599, 104385715], [104390537, 104390683], [104432341, 104433389], [104448877, 104449482], [104499562, 104500862]]	[[104335455, 104335795], [104340049, 104340126], [104341477, 104341642], [104375657, 104375809], [104385599, 104385715], [104390537, 104390683], [104432341, 104433389], [104448877, 104449482], [104499562, 104500261]]

Promoter

Chrom	Start	End	Description
chr9	104500922	104500940	CAGE_peak_1_at_GRIN3A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I101569	101569397	101570711	0.52	[{'connected_gene': 'TMEM246', 'score': 10.92}, {'connected_gene': 'RNF20', 'score': 10.92}, {'connected_gene': 'PPP3R2', 'score': 10.92}, {'connected_gene': 'PIR43226', 'score': 0.34}, {'connected_gene': 'GRIN3A', 'score': 0.1}]
chr9	GH09I101594	101594959	101595018	0.5	[{'connected_gene': 'PPP3R2', 'score': 550.77}, {'connected_gene': 'PIR59715', 'score': 550.77}, {'connected_gene': 'PIR43226', 'score': 550.77}, {'connected_gene': 'LOC105376186', 'score': 550.77}, {'connected_gene': 'GC09P101598', 'score': 550.77}, {'connected_gene': 'PIR31501', 'score': 550.77}, {'connected_gene': 'GRIN3A', 'score': 0.11}]
chr9	GH09I101673	101673199	101674550	0.31	[{'connected_gene': 'GRIN3A', 'score': 10.49}, {'connected_gene': 'PPP3R2', 'score': 10.4}, {'connected_gene': 'TMEM246-AS1', 'score': 5.05}, {'connected_gene': 'GC09P101627', 'score': 0.25}]
chr9	GH09I101716	101716258	101717541	0.31	[{'connected_gene': 'GRIN3A', 'score': 12.68}, {'connected_gene': 'TMEM246-AS1', 'score': 5.99}, {'connected_gene': 'GC09P101627', 'score': 0.17}]
chr9	GH09I101738	101738637	101738696	0.79	[{'connected_gene': 'GRIN3A', 'score': 550.77}, {'connected_gene': 'MTND3P4', 'score': 0.22}]
chr9	GH09I101704	101704897	101705801	0.58	[{'connected_gene': 'GRIN3A', 'score': 11.29}, {'connected_gene': 'GC09P101627', 'score': 0.18}]
chr9	GH09I101739	101738153	101738212	0.84	[{'connected_gene': 'GRIN3A', 'score': 550.77}, {'connected_gene': 'GC09P101627', 'score': 0.14}]
chr9	GH09I101585	101585401	101586400	0.2	[{'connected_gene': 'PIR43226', 'score': 0.44}, {'connected_gene': 'RNF20', 'score': 0.23}, {'connected_gene': 'GRIN3A', 'score': 0.1}]
chr9	GH09I101582	101582699	101582848	0.38	[{'connected_gene': 'PIR43226', 'score': 0.39}, {'connected_gene': 'RNF20', 'score': 0.25}, {'connected_gene': 'GRIN3A', 'score': 0.1}]