PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371077	[[64669309, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64726285, 64726377]]	[[64669733, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64726285, 64726377]]
ENST00000371076	[[64669489, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64709812, 64710027]]	[[64669733, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64709812, 64709816]]
ENST00000608020	[[64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64726285, 64726377], [64732706, 64733051]]	[[64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64726285, 64726377], [64732706, 64732891]]
ENST00000464349	[[64681135, 64681208], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64709812, 64710023]]	None
ENST00000608956	[[64686546, 64686590], [64707334, 64707416], [64726285, 64726377], [64732706, 64732932]]	[[64686546, 64686590], [64707334, 64707416], [64726285, 64726377], [64732706, 64732891]]
NM_152489	[[64669300, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64709812, 64711957]]	[[64669733, 64669799], [64671321, 64671403], [64672446, 64672539], [64676424, 64676522], [64680497, 64680615], [64686541, 64686590], [64698243, 64698332], [64707334, 64707416], [64709812, 64709816]]

Promoter

Chrom	Start	End	Description
chr1	64669294	64669320	CAGE_peak_1_at_UBE2U_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I064037	64037814	64040847	1.57	[{'connected_gene': 'EFCAB7', 'score': 12.55}, {'connected_gene': 'ITGB3BP', 'score': 12.39}, {'connected_gene': 'DLEU2L', 'score': 9.77}, {'connected_gene': 'ROR1', 'score': 1.66}, {'connected_gene': 'UBE2U', 'score': 1.41}, {'connected_gene': 'LOC105378772', 'score': 0.77}, {'connected_gene': 'GC01P064043', 'score': 0.77}]
chr1	GH01I064222	64222859	64224226	0.8	[{'connected_gene': 'EFCAB7', 'score': 18.01}, {'connected_gene': 'ITGB3BP', 'score': 11.13}, {'connected_gene': 'UBE2U', 'score': 4.77}, {'connected_gene': 'GC01M064169', 'score': 0.37}, {'connected_gene': 'LOC105378773', 'score': 0.31}]
chr1	GH01I063746	63745285	63748064	1.07	[{'connected_gene': 'DLEU2L', 'score': 12.38}, {'connected_gene': 'ROR1', 'score': 12.02}, {'connected_gene': 'ITGB3BP', 'score': 10.52}, {'connected_gene': 'UBE2U', 'score': 10.05}, {'connected_gene': 'GC01M063731', 'score': 0.77}, {'connected_gene': 'GC01P063754', 'score': 0.44}]
chr1	GH01I063793	63793775	63796003	1	[{'connected_gene': 'ROR1', 'score': 12.0}, {'connected_gene': 'UBE2U', 'score': 10.5}, {'connected_gene': 'GC01M063770', 'score': 0.77}, {'connected_gene': 'GC01P063805', 'score': 0.39}]
chr1	GH01I064342	64342460	64345521	1.1	[{'connected_gene': 'ITGB3BP', 'score': 33.56}, {'connected_gene': 'EFCAB7', 'score': 20.72}, {'connected_gene': 'LINC01359', 'score': 13.3}, {'connected_gene': 'ALG6', 'score': 10.6}, {'connected_gene': 'UBE2U', 'score': 4.77}, {'connected_gene': 'GC01P064331', 'score': 0.39}, {'connected_gene': 'LOC105378774', 'score': 0.31}]
chr1	GH01I063661	63661041	63664558	1.09	[{'connected_gene': 'ITGB3BP', 'score': 15.93}, {'connected_gene': 'UBE2U', 'score': 10.24}, {'connected_gene': 'DOCK7', 'score': 9.76}, {'connected_gene': 'ROR1', 'score': 5.85}, {'connected_gene': 'LOC105378771', 'score': 0.44}, {'connected_gene': 'RN7SL130P', 'score': 0.44}]
chr1	GH01I064183	64183214	64184707	1.07	[{'connected_gene': 'UBE2U', 'score': 23.56}, {'connected_gene': 'ITGB3BP', 'score': 20.32}, {'connected_gene': 'EFCAB7', 'score': 12.1}, {'connected_gene': 'JAK1', 'score': 11.76}, {'connected_gene': 'LINC01359', 'score': 11.0}, {'connected_gene': 'SLC2A3P2', 'score': 10.73}, {'connected_gene': 'GC01P064179', 'score': 0.77}, {'connected_gene': 'GC01M064169', 'score': 0.22}]
chr1	GH01I064245	64245401	64246000	0.79	[{'connected_gene': 'UBE2U', 'score': 11.02}, {'connected_gene': 'ITGB3BP', 'score': 10.47}, {'connected_gene': 'PGM1', 'score': 10.47}, {'connected_gene': 'GC01M064169', 'score': 0.44}, {'connected_gene': 'GC01M064282', 'score': 0.28}]
chr1	GH01I064243	64243201	64244166	0.76	[{'connected_gene': 'UBE2U', 'score': 15.64}, {'connected_gene': 'ITGB3BP', 'score': 10.47}, {'connected_gene': 'GC01M064169', 'score': 0.77}, {'connected_gene': 'GC01M064282', 'score': 0.26}]
chr1	GH01I064211	64211481	64212656	0.2	[{'connected_gene': 'UBE2U', 'score': 7.28}, {'connected_gene': 'LOC105378773', 'score': 0.37}, {'connected_gene': 'GC01M064169', 'score': 0.31}]
chr1	GH01I064231	64231278	64231327	0.75	[{'connected_gene': 'UBE2U', 'score': 12.26}, {'connected_gene': 'GC01M064169', 'score': 0.44}, {'connected_gene': 'LOC105378773', 'score': 0.28}]
chr1	GH01I064203	64203659	64203718	0.5	[{'connected_gene': 'UBE2U', 'score': 550.37}, {'connected_gene': 'LOC105378773', 'score': 0.44}, {'connected_gene': 'GC01M064169', 'score': 0.28}]
chr1	GH01I063860	63860917	63861632	0.38	[{'connected_gene': 'UBE2U', 'score': 9.71}, {'connected_gene': 'GC01M063862', 'score': 0.44}, {'connected_gene': 'CFL1P3', 'score': 0.37}, {'connected_gene': 'ROR1', 'score': 0.17}]
chr1	GH01I063859	63859601	63859800	0.2	[{'connected_gene': 'UBE2U', 'score': 9.71}, {'connected_gene': 'GC01M063862', 'score': 0.44}, {'connected_gene': 'CFL1P3', 'score': 0.37}, {'connected_gene': 'ROR1', 'score': 0.17}]
chr1	GH01I064262	64262792	64264156	0.54	[{'connected_gene': 'UBE2U', 'score': 4.78}, {'connected_gene': 'GC01M064282', 'score': 0.34}, {'connected_gene': 'GC01M064169', 'score': 0.34}]
chr1	GH01I064269	64269258	64269407	0.71	[{'connected_gene': 'UBE2U', 'score': 15.4}, {'connected_gene': 'GC01M064282', 'score': 0.37}, {'connected_gene': 'GC01M064169', 'score': 0.29}]
chr1	GH01I064186	64186355	64187146	0.52	[{'connected_gene': 'UBE2U', 'score': 573.87}, {'connected_gene': 'GC01P064179', 'score': 0.44}, {'connected_gene': 'GC01M064169', 'score': 0.23}]
chr1	GH01I064194	64194972	64195725	0.49	[{'connected_gene': 'LOC105378773', 'score': 550.77}, {'connected_gene': 'UBE2U', 'score': 12.08}, {'connected_gene': 'GC01M064169', 'score': 0.26}]
chr1	GH01I064035	64035094	64035504	0.28	[{'connected_gene': 'LOC105378772', 'score': 550.77}, {'connected_gene': 'UBE2U', 'score': 63.33}, {'connected_gene': 'ROR1', 'score': 10.22}, {'connected_gene': 'GC01P064043', 'score': 0.44}]
chr1	GH01I064171	64171120	64173943	1.13	[{'connected_gene': 'ROR1-AS1', 'score': 550.77}, {'connected_gene': 'EFCAB7', 'score': 38.21}, {'connected_gene': 'DLEU2L', 'score': 32.45}, {'connected_gene': 'ITGB3BP', 'score': 31.42}, {'connected_gene': 'UBE2U', 'score': 15.42}, {'connected_gene': 'ENSG00000272506', 'score': 13.21}, {'connected_gene': 'LINC01359', 'score': 10.67}, {'connected_gene': 'ALG6', 'score': 10.6}, {'connected_gene': 'GC01P064179', 'score': 0.44}, {'connected_gene': 'GC01M064169', 'score': 0.2}, {'connected_gene': 'ROR1', 'score': 0.05}]
chr1	GH01I064136	64136370	64139506	0.82	[{'connected_gene': 'ROR1-AS1', 'score': 11.12}, {'connected_gene': 'UBE2U', 'score': 10.98}, {'connected_gene': 'ROR1', 'score': 10.68}, {'connected_gene': 'GC01P064135', 'score': 0.77}, {'connected_gene': 'GC01M064149', 'score': 0.31}]
chr1	GH01I064165	64164278	64164487	0.54	[{'connected_gene': 'GC01M064149', 'score': 550.77}, {'connected_gene': 'ITGB3BP', 'score': 11.14}, {'connected_gene': 'LINC01359', 'score': 10.67}, {'connected_gene': 'UBE2U', 'score': 5.02}, {'connected_gene': 'ROR1-AS1', 'score': 0.44}, {'connected_gene': 'ROR1', 'score': 0.05}]
chr1	GH01I064132	64132718	64134054	0.43	[{'connected_gene': 'GC01P064135', 'score': 550.77}, {'connected_gene': 'UBE2U', 'score': 10.81}, {'connected_gene': 'ROR1', 'score': 10.48}, {'connected_gene': 'ROR1-AS1', 'score': 0.28}, {'connected_gene': 'GC01M064067', 'score': 0.2}, {'connected_gene': 'ENSG00000200508', 'score': 0.2}]
chr1	GH01I064163	64163499	64164042	0.46	[{'connected_gene': 'GC01M064149', 'score': 550.77}, {'connected_gene': 'UBE2U', 'score': 4.95}, {'connected_gene': 'ROR1-AS1', 'score': 0.44}, {'connected_gene': 'ROR1', 'score': 0.05}]
chr1	GH01I064160	64160945	64162061	0.2	[{'connected_gene': 'GC01M064149', 'score': 550.77}, {'connected_gene': 'UBE2U', 'score': 26.03}, {'connected_gene': 'ROR1-AS1', 'score': 0.44}, {'connected_gene': 'GC01P064135', 'score': 0.31}, {'connected_gene': 'ROR1', 'score': 0.05}]