PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000527420	[[96796529, 96797066], [96798653, 96798795], [96800678, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828991, 96829160]]	[[96800684, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448]]
ENST00000490994	[[96796529, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828953, 96829254]]	[[96827402, 96827448], [96828953, 96829159]]
ENST00000371270	[[96796529, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828991, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828991, 96829159]]
ENST00000527953	[[96796534, 96797066], [96798653, 96798795], [96800678, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827448], [96828991, 96829243]]	None
ENST00000526814	[[96796534, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827448], [96828991, 96829243]]	None
ENST00000533320	[[96796558, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827448], [96828953, 96829184]]	None
ENST00000535898	[[96796740, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96828953, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96828953, 96828978]]
ENST00000525991	[[96796740, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96828953, 96829254]]	[[96827020, 96827114], [96828953, 96829159]]
ENST00000531714	[[96796938, 96797066], [96798653, 96799132]]	None
ENST00000479946	[[96798715, 96798795], [96800678, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827448], [96828953, 96829254]]	None
ENST00000539050	[[96800677, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827448], [96828953, 96829254]]	[[96800684, 96800717], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827187]]
NM_001198855	[[96796528, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828323, 96828385], [96828953, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827406]]
NM_001198853	[[96796528, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828953, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827406]]
NM_001198854	[[96796528, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96828953, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96828953, 96828978]]
NM_000770	[[96796528, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828991, 96829254]]	[[96796884, 96797066], [96798653, 96798795], [96802646, 96802834], [96805566, 96805708], [96818091, 96818268], [96824556, 96824717], [96826964, 96827114], [96827285, 96827448], [96828991, 96829159]]

Promoter

Chrom	Start	End	Description
chr10	96829178	96829189	CAGE_peak_2_at_CYP2C8_5end
chr10	96829246	96829259	CAGE_peak_1_at_CYP2C8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I095286	95286324	95298104	2.75	[{'connected_gene': 'PDLIM1', 'score': 561.82}, {'connected_gene': 'TBC1D12', 'score': 4.53}, {'connected_gene': 'CYP2C8', 'score': 4.11}, {'connected_gene': 'ENTPD1', 'score': 3.56}, {'connected_gene': 'SORBS1', 'score': 1.4}, {'connected_gene': 'GC10M095392', 'score': 0.15}]
chr10	GH10I095271	95271476	95282774	1.39	[{'connected_gene': 'PDLIM1', 'score': 8.83}, {'connected_gene': 'CYP2C8', 'score': 6.54}, {'connected_gene': 'TBC1D12', 'score': 5.33}, {'connected_gene': 'ACSM6', 'score': 5.3}, {'connected_gene': 'CYP2C18', 'score': 4.61}, {'connected_gene': 'TCTN3', 'score': 4.0}, {'connected_gene': 'GC10M095264', 'score': 0.44}, {'connected_gene': 'GC10M095235', 'score': 0.26}]
chr10	GH10I095259	95259414	95269654	1.71	[{'connected_gene': 'PDLIM1', 'score': 16.95}, {'connected_gene': 'CYP2C8', 'score': 11.42}, {'connected_gene': 'ACSM6', 'score': 10.21}, {'connected_gene': 'GC10M095264', 'score': 0.37}, {'connected_gene': 'GC10M095235', 'score': 0.31}]
chr10	GH10I095178	95178904	95179053	0.71	[{'connected_gene': 'PDLIM1', 'score': 9.96}, {'connected_gene': 'CYP2C8', 'score': 5.24}, {'connected_gene': 'PAWRP1', 'score': 0.77}, {'connected_gene': 'ENSG00000274691', 'score': 0.44}]
chr10	GH10I095250	95250667	95251439	0.2	[{'connected_gene': 'CYP2C8', 'score': 6.7}, {'connected_gene': 'GC10M095235', 'score': 0.39}, {'connected_gene': 'GC10M095264', 'score': 0.29}, {'connected_gene': 'PDLIM1', 'score': 0.26}]
chr10	GH10I095252	95252862	95254940	0.72	[{'connected_gene': 'CYP2C8', 'score': 7.51}, {'connected_gene': 'GC10M095235', 'score': 0.37}, {'connected_gene': 'GC10M095264', 'score': 0.31}, {'connected_gene': 'PDLIM1', 'score': 0.28}]
chr10	GH10I095249	95249596	95250070	0.31	[{'connected_gene': 'CYP2C8', 'score': 11.95}, {'connected_gene': 'GC10M095235', 'score': 0.39}, {'connected_gene': 'GC10M095264', 'score': 0.29}, {'connected_gene': 'PDLIM1', 'score': 0.26}]
chr10	GH10I095244	95244910	95249360	1.21	[{'connected_gene': 'CYP2C8', 'score': 7.63}, {'connected_gene': 'TCTN3', 'score': 4.33}, {'connected_gene': 'GC10M095235', 'score': 0.39}, {'connected_gene': 'GC10M095264', 'score': 0.28}, {'connected_gene': 'PDLIM1', 'score': 0.26}]
chr10	GH10I095208	95208644	95209588	0.66	[{'connected_gene': 'CYP2C8', 'score': 6.11}, {'connected_gene': 'ACSM6', 'score': 0.39}, {'connected_gene': 'ENSG00000234026', 'score': 0.34}]
chr10	GH10I095214	95214197	95215971	0.77	[{'connected_gene': 'CYP2C8', 'score': 7.63}, {'connected_gene': 'ENSG00000234026', 'score': 0.37}, {'connected_gene': 'ACSM6', 'score': 0.34}]
chr10	GH10I095069	95069487	95069546	0.94	[{'connected_gene': 'CYP2C8', 'score': 550.77}, {'connected_gene': 'ENSG00000231829', 'score': 0.15}]
chr10	GH10I095226	95226568	95227117	0.2	[{'connected_gene': 'ACSM6', 'score': 12.36}, {'connected_gene': 'PDLIM1', 'score': 10.81}, {'connected_gene': 'CYP2C8', 'score': 10.74}, {'connected_gene': 'ENSG00000234026', 'score': 0.77}]
chr10	GH10I095220	95220724	95222724	0.96	[{'connected_gene': 'ACSM6', 'score': 12.56}, {'connected_gene': 'PDLIM1', 'score': 10.81}, {'connected_gene': 'CYP2C8', 'score': 6.99}, {'connected_gene': 'ENSG00000234026', 'score': 0.44}]
chr10	GH10I095217	95217321	95218849	0.2	[{'connected_gene': 'ACSM6', 'score': 21.13}, {'connected_gene': 'PDLIM1', 'score': 10.44}, {'connected_gene': 'CYP2C8', 'score': 7.7}, {'connected_gene': 'ENSG00000234026', 'score': 0.39}]
chr10	GH10I095242	95242723	95243663	0.79	[{'connected_gene': 'ACSM6', 'score': 11.89}, {'connected_gene': 'PDLIM1', 'score': 11.18}, {'connected_gene': 'PLCE1-AS1', 'score': 4.27}, {'connected_gene': 'CYP2C8', 'score': 4.23}, {'connected_gene': 'TCTN3', 'score': 4.18}, {'connected_gene': 'GC10M095235', 'score': 0.44}, {'connected_gene': 'GC10M095264', 'score': 0.28}]
chr10	GH10I095241	95241125	95242322	0.2	[{'connected_gene': 'ACSM6', 'score': 20.9}, {'connected_gene': 'CYP2C8', 'score': 12.13}, {'connected_gene': 'PDLIM1', 'score': 11.18}, {'connected_gene': 'TCTN3', 'score': 4.58}, {'connected_gene': 'GC10M095235', 'score': 0.77}, {'connected_gene': 'GC10M095264', 'score': 0.26}]
chr10	GH10I095196	95195421	95196457	0.31	[{'connected_gene': 'ACSM6', 'score': 550.77}, {'connected_gene': 'CYP2C8', 'score': 8.13}, {'connected_gene': 'ENSG00000234026', 'score': 0.28}]
chr10	GH10I095331	95330124	95330487	0.76	[{'connected_gene': 'SORBS1', 'score': 7.81}, {'connected_gene': 'CYP2C8', 'score': 1.87}, {'connected_gene': 'CYP2C9', 'score': 1.61}, {'connected_gene': 'PDLIM1', 'score': 0.28}, {'connected_gene': 'GC10M095392', 'score': 0.21}]
chr10	GH10I095181	95181844	95181993	0.46	[{'connected_gene': 'PAWRP1', 'score': 550.77}, {'connected_gene': 'ZNF518A', 'score': 11.38}, {'connected_gene': 'HELLS', 'score': 10.7}, {'connected_gene': 'PDLIM1', 'score': 9.97}, {'connected_gene': 'ENTPD1-AS1', 'score': 9.8}, {'connected_gene': 'CYP2C8', 'score': 5.15}, {'connected_gene': 'ENSG00000274691', 'score': 0.44}]
chr10	GH10I095182	95182816	95184401	1.75	[{'connected_gene': 'PAWRP1', 'score': 550.77}, {'connected_gene': 'ZNF518A', 'score': 24.17}, {'connected_gene': 'TCTN3', 'score': 17.19}, {'connected_gene': 'CCNJ', 'score': 13.66}, {'connected_gene': 'PDLIM1', 'score': 10.58}, {'connected_gene': 'HELLS', 'score': 10.03}, {'connected_gene': 'ENTPD1-AS1', 'score': 9.7}, {'connected_gene': 'CYP2C8', 'score': 8.18}, {'connected_gene': 'ACSM6', 'score': 5.27}, {'connected_gene': 'SORBS1', 'score': 2.28}, {'connected_gene': 'ENSG00000274691', 'score': 0.39}]
chr10	GH10I095133	95133004	95133233	0.91	[{'connected_gene': 'ENSG00000231829', 'score': 0.28}, {'connected_gene': 'CYP2C8', 'score': 0.21}]
chr10	GH10I095227	95227485	95232932	1.53	[{'connected_gene': 'ENSG00000234026', 'score': 550.77}, {'connected_gene': 'ACSM6', 'score': 12.35}, {'connected_gene': 'PDLIM1', 'score': 10.81}, {'connected_gene': 'CYP2C8', 'score': 10.74}, {'connected_gene': 'TCTN3', 'score': 4.62}]
chr10	GH10I095234	95234888	95237089	1.25	[{'connected_gene': 'GC10M095235', 'score': 550.77}, {'connected_gene': 'ACSM6', 'score': 11.89}, {'connected_gene': 'PDLIM1', 'score': 11.32}, {'connected_gene': 'CYP2C8', 'score': 10.81}, {'connected_gene': 'TCTN3', 'score': 5.33}, {'connected_gene': 'ENSG00000234026', 'score': 0.77}]
chr10	GH10I095237	95237346	95238882	0.43	[{'connected_gene': 'GC10M095235', 'score': 550.77}, {'connected_gene': 'ACSM6', 'score': 21.37}, {'connected_gene': 'CYP2C8', 'score': 12.07}, {'connected_gene': 'PDLIM1', 'score': 11.33}, {'connected_gene': 'GC10M095264', 'score': 0.26}]
chr10	GH10I094314	94314840	94317058	0.83	[{'connected_gene': 'ENSG00000273450', 'score': 550.77}, {'connected_gene': 'PLCE1-AS1', 'score': 14.48}, {'connected_gene': 'CYP2C8', 'score': 4.74}, {'connected_gene': 'NOC3L', 'score': 0.25}, {'connected_gene': 'PIR55864', 'score': 0.25}, {'connected_gene': 'PLCE1', 'score': 0.05}]