PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000336596	[[89156673, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521769], [89528546, 89531284]]	[[89156898, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521769], [89528546, 89528652]]
ENST00000452448	[[89156811, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89449495]]	[[89156898, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448656]]
ENST00000494014	[[89156825, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521672], [89528546, 89528809]]	[[89156898, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521672], [89528546, 89528554]]
NM_182644	[[89156673, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89449495]]	[[89156898, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448656]]
NM_005233	[[89156673, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521769], [89528546, 89531284]]	[[89156898, 89156986], [89176358, 89176423], [89259009, 89259670], [89390065, 89390221], [89390904, 89391240], [89444986, 89445111], [89448467, 89448630], [89456418, 89456521], [89457216, 89457281], [89462290, 89462416], [89468354, 89468540], [89478255, 89478317], [89480299, 89480509], [89498374, 89498524], [89499326, 89499520], [89521613, 89521769], [89528546, 89528652]]

Promoter

Chrom	Start	End	Description
chr3	89156763	89156797	CAGE_peak_1_at_EPHA3_5end
chr3	89156799	89156831	CAGE_peak_3_at_EPHA3_5end
chr3	89156832	89156848	CAGE_peak_2_at_EPHA3_5end
chr3	89156872	89156883	CAGE_peak_4_at_EPHA3_5end
chr3	89156891	89156894	CAGE_peak_5_at_EPHA3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I089303	89303503	89303900	0.23	[{'connected_gene': 'EPHA3', 'score': 9.55}, {'connected_gene': 'GC03M089148', 'score': 0.31}, {'connected_gene': 'GC03P089376', 'score': 0.19}]
chr3	GH03I088689	88689652	88691829	0.2	[{'connected_gene': 'EPHA3', 'score': 5.1}, {'connected_gene': 'GC03P088710', 'score': 0.37}, {'connected_gene': 'GC03P088601', 'score': 0.17}]
chr3	GH03I089113	89113718	89116378	1.03	[{'connected_gene': 'EPHA3', 'score': 0.44}, {'connected_gene': 'GC03P089148', 'score': 0.29}]
chr3	GH03I089107	89107201	89107801	1.83	[{'connected_gene': 'EPHA3', 'score': 550.77}, {'connected_gene': 'GC03M089046', 'score': 0.22}]
chr3	GH03I089104	89104401	89104800	0.2	[{'connected_gene': 'EPHA3', 'score': 0.77}, {'connected_gene': 'GC03M089046', 'score': 0.23}]
chr3	GH03I089108	89108000	89108200	0.84	[{'connected_gene': 'EPHA3', 'score': 550.77}, {'connected_gene': 'GC03P089148', 'score': 0.26}]
chr3	GH03I089332	89332911	89333060	0.2	[{'connected_gene': 'GC03P089376', 'score': 0.26}, {'connected_gene': 'GC03M089148', 'score': 0.22}, {'connected_gene': 'EPHA3', 'score': 0.07}]
chr3	GH03I089165	89165251	89166219	0.31	[{'connected_gene': 'PIR57790', 'score': 0.77}, {'connected_gene': 'GC03P089171', 'score': 0.77}, {'connected_gene': 'GC03P089148', 'score': 0.37}, {'connected_gene': 'EPHA3', 'score': 0.22}, {'connected_gene': 'GC03M089148', 'score': 0.14}]
chr3	GH03I089246	89246451	89246600	0.38	[{'connected_gene': 'GC03M089268', 'score': 0.31}, {'connected_gene': 'GC03M089148', 'score': 0.29}, {'connected_gene': 'GC03P089203', 'score': 0.26}, {'connected_gene': 'EPHA3', 'score': 0.12}]
chr3	GH03I089278	89278244	89278684	0.43	[{'connected_gene': 'GC03M089148', 'score': 550.77}, {'connected_gene': 'GC03P089376', 'score': 0.15}, {'connected_gene': 'EPHA3', 'score': 0.09}]
chr3	GH03I089419	89419873	89420298	0.2	[{'connected_gene': 'GC03P089398', 'score': 0.34}, {'connected_gene': 'GC03M089485', 'score': 0.2}, {'connected_gene': 'EPHA3', 'score': 0.06}]
chr3	GH03I089172	89172191	89172340	0.31	[{'connected_gene': 'PIR57790', 'score': 550.77}, {'connected_gene': 'GC03P089171', 'score': 550.77}, {'connected_gene': 'PIR35446', 'score': 0.37}, {'connected_gene': 'GC03P089201', 'score': 0.37}, {'connected_gene': 'GC03P089199', 'score': 0.37}, {'connected_gene': 'EPHA3', 'score': 0.21}, {'connected_gene': 'GC03M089148', 'score': 0.15}]
chr3	GH03I089466	89466601	89466800	0.2	[{'connected_gene': 'GC03M089485', 'score': 0.34}, {'connected_gene': 'GC03P089398', 'score': 0.2}, {'connected_gene': 'EPHA3', 'score': 0.05}]
chr3	GH03I089171	89171791	89171940	0.2	[{'connected_gene': 'PIR57790', 'score': 550.77}, {'connected_gene': 'GC03P089171', 'score': 550.77}, {'connected_gene': 'PIR35446', 'score': 0.37}, {'connected_gene': 'GC03P089201', 'score': 0.37}, {'connected_gene': 'GC03P089199', 'score': 0.37}, {'connected_gene': 'EPHA3', 'score': 0.21}, {'connected_gene': 'GC03M089148', 'score': 0.15}]
chr3	GH03I089179	89179264	89180463	0.72	[{'connected_gene': 'PIR57790', 'score': 0.44}, {'connected_gene': 'PIR35446', 'score': 0.44}, {'connected_gene': 'GC03P089171', 'score': 0.44}, {'connected_gene': 'GC03P089201', 'score': 0.44}, {'connected_gene': 'GC03P089199', 'score': 0.44}, {'connected_gene': 'EPHA3', 'score': 0.19}, {'connected_gene': 'GC03M089148', 'score': 0.15}]
chr3	GH03I089216	89216870	89217856	0.43	[{'connected_gene': 'GC03P089203', 'score': 0.39}, {'connected_gene': 'GC03M089148', 'score': 0.22}, {'connected_gene': 'GC03M089268', 'score': 0.22}, {'connected_gene': 'EPHA3', 'score': 0.14}]