Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000289104 [[138066538, 138067167], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124375]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
ENST00000423968 [[138067313, 138067609], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121973]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
ENST00000494949 [[138067535, 138067609], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121034]] [[138116200, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121034]]
ENST00000475711 [[138067691, 138067874], [138091707, 138091795]] [[138091725, 138091795]]
ENST00000464896 [[138067691, 138067874], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138122028]] [[138116200, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
ENST00000477784 [[138067748, 138067874], [138068525, 138068793]] None
ENST00000461114 [[138067987, 138068221], [138068525, 138069264]] None
ENST00000474559 [[138068103, 138068221], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121204]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
ENST00000478647 [[138119050, 138119455], [138121011, 138121035]] None
NM_001252091 [[138066489, 138067167], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138116200, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
NM_012219 [[138066489, 138067167], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
NM_001252093 [[138067507, 138067609], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138116200, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
NM_001085049 [[138067507, 138067609], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
NM_001252092 [[138067691, 138067874], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138116200, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
NM_001252090 [[138067969, 138068221], [138091707, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138124377]] [[138091725, 138091918], [138116165, 138116319], [138117310, 138117410], [138119375, 138119455], [138121011, 138121111]]
Promoter
Chrom Start End Description
chr3 138066541 138066580 CAGE_peak_10_at_MRAS_5end
chr3 138066901 138066914 CAGE_peak_15_at_MRAS_5end
chr3 138067105 138067137 CAGE_peak_6_at_MRAS_5end
chr3 138067155 138067166 CAGE_peak_21_at_MRAS_5end
chr3 138067413 138067428 CAGE_peak_1_at_MRAS_5end
chr3 138067434 138067443 CAGE_peak_11_at_MRAS_5end
chr3 138067461 138067488 CAGE_peak_3_at_MRAS_5end
chr3 138067492 138067519 CAGE_peak_2_at_MRAS_5end
chr3 138067521 138067553 CAGE_peak_5_at_MRAS_5end
chr3 138067565 138067579 CAGE_peak_7_at_MRAS_5end
chr3 138067666 138067745 CAGE_peak_4_at_MRAS_5end
chr3 138068051 138068080 CAGE_peak_9_at_MRAS_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr3 GH03I138940 138939937 138940397 0.43 [{'connected_gene': 'CEP70', 'score': 10.2}, {'connected_gene': 'MRAS', 'score': 6.03}, {'connected_gene': 'LINC01391', 'score': 0.77}, {'connected_gene': 'ATP5MC1P3', 'score': 0.23}]
chr3 GH03I138831 138831786 138836423 2.26 [{'connected_gene': 'PIK3CB', 'score': 559.83}, {'connected_gene': 'ACTG1P1', 'score': 11.56}, {'connected_gene': 'FAIM', 'score': 9.14}, {'connected_gene': 'MRAS', 'score': 1.3}, {'connected_gene': 'GC03M138772', 'score': 0.44}]
chr3 GH03I138080 138080772 138084322 1.1 [{'connected_gene': 'A4GNT', 'score': 12.76}, {'connected_gene': 'DZIP1L', 'score': 12.19}, {'connected_gene': 'MRAS', 'score': 6.22}, {'connected_gene': 'LOC105374128', 'score': 0.34}, {'connected_gene': 'KRT8P36', 'score': 0.34}]
chr3 GH03I138942 138942217 138948361 1.83 [{'connected_gene': 'FOXL2NB', 'score': 550.77}, {'connected_gene': 'LINC01391', 'score': 550.77}, {'connected_gene': 'FOXL2', 'score': 550.77}, {'connected_gene': 'DBR1', 'score': 28.08}, {'connected_gene': 'DZIP1L', 'score': 25.48}, {'connected_gene': 'ENSG00000272656', 'score': 11.16}, {'connected_gene': 'CEP70', 'score': 10.28}, {'connected_gene': 'ACTG1P1', 'score': 9.79}, {'connected_gene': 'COPB2', 'score': 9.67}, {'connected_gene': 'MRAS', 'score': 6.41}]
chr3 GH03I138420 138420991 138422595 0.2 [{'connected_gene': 'NME9', 'score': 11.35}, {'connected_gene': 'FAIM', 'score': 5.87}, {'connected_gene': 'MRAS', 'score': 5.44}, {'connected_gene': 'GC03M138428', 'score': 0.44}, {'connected_gene': 'LOC105374129', 'score': 0.39}, {'connected_gene': 'GC03P138407', 'score': 0.39}]
chr3 GH03I138410 138410617 138414282 1.16 [{'connected_gene': 'NME9', 'score': 11.53}, {'connected_gene': 'MRAS', 'score': 11.1}, {'connected_gene': 'ESYT3', 'score': 7.52}, {'connected_gene': 'LOC105374129', 'score': 0.77}, {'connected_gene': 'GC03P138407', 'score': 0.44}, {'connected_gene': 'GC03M138428', 'score': 0.37}]
chr3 GH03I138363 138363266 138366408 0.43 [{'connected_gene': 'NME9', 'score': 11.55}, {'connected_gene': 'MRAS', 'score': 10.67}, {'connected_gene': 'DZIP1L', 'score': 4.78}, {'connected_gene': 'GC03M138344', 'score': 0.39}, {'connected_gene': 'GC03P138407', 'score': 0.26}]
chr3 GH03I138384 138384801 138385400 0.72 [{'connected_gene': 'NME9', 'score': 10.77}, {'connected_gene': 'MRAS', 'score': 5.58}, {'connected_gene': 'GC03P138407', 'score': 0.34}, {'connected_gene': 'GC03M138344', 'score': 0.28}]
chr3 GH03I138367 138367201 138368401 0.86 [{'connected_gene': 'NME9', 'score': 11.53}, {'connected_gene': 'MRAS', 'score': 10.62}, {'connected_gene': 'GC03M138344', 'score': 0.37}, {'connected_gene': 'GC03P138407', 'score': 0.28}]
chr3 GH03I138362 138362297 138362822 0.38 [{'connected_gene': 'NME9', 'score': 11.55}, {'connected_gene': 'GC03M138344', 'score': 0.39}, {'connected_gene': 'MRAS', 'score': 0.39}, {'connected_gene': 'GC03P138407', 'score': 0.26}]
chr3 GH03I138361 138361794 138361934 0.43 [{'connected_gene': 'NME9', 'score': 11.17}, {'connected_gene': 'GC03M138344', 'score': 0.39}, {'connected_gene': 'MRAS', 'score': 0.39}, {'connected_gene': 'GC03P138407', 'score': 0.25}]
chr3 GH03I138387 138384001 138384200 0.86 [{'connected_gene': 'NME9', 'score': 10.77}, {'connected_gene': 'GC03P138407', 'score': 0.34}, {'connected_gene': 'GC03M138344', 'score': 0.29}, {'connected_gene': 'MRAS', 'score': 0.28}]
chr3 GH03I138221 138221801 138223000 0.51 [{'connected_gene': 'ARMC8', 'score': 12.3}, {'connected_gene': 'DBR1', 'score': 12.14}, {'connected_gene': 'MRAS', 'score': 10.32}, {'connected_gene': 'NME9', 'score': 10.3}, {'connected_gene': 'DZIP1L', 'score': 9.58}, {'connected_gene': 'GC03P138286', 'score': 0.21}]
chr3 GH03I138186 138186259 138189296 2.04 [{'connected_gene': 'ARMC8', 'score': 550.77}, {'connected_gene': 'MRAS', 'score': 12.2}, {'connected_gene': 'CEP70', 'score': 11.64}, {'connected_gene': 'A4GNT', 'score': 4.1}, {'connected_gene': 'GC03P138286', 'score': 0.15}]
chr3 GH03I138442 138442331 138445387 0.74 [{'connected_gene': 'MRAS', 'score': 11.08}, {'connected_gene': 'ESYT3', 'score': 5.06}, {'connected_gene': 'GC03M138467', 'score': 0.34}, {'connected_gene': 'GC03P138407', 'score': 0.28}]
chr3 GH03I138440 138440248 138440908 0.43 [{'connected_gene': 'MRAS', 'score': 11.09}, {'connected_gene': 'ESYT3', 'score': 0.44}, {'connected_gene': 'GC03M138467', 'score': 0.31}, {'connected_gene': 'GC03P138407', 'score': 0.29}]
chr3 GH03I138604 138604279 138604456 0.24 [{'connected_gene': 'MRAS', 'score': 2.37}, {'connected_gene': 'PIK3CB', 'score': 2.3}, {'connected_gene': 'GC03P138606', 'score': 0.77}, {'connected_gene': 'CEP70', 'score': 0.44}]
chr3 GH03I138373 138373873 138379083 0.79 [{'connected_gene': 'MRAS', 'score': 40.01}, {'connected_gene': 'DBR1', 'score': 39.98}, {'connected_gene': 'DZIP1L', 'score': 29.25}, {'connected_gene': 'ENSG00000272656', 'score': 21.49}, {'connected_gene': 'NME9', 'score': 5.12}, {'connected_gene': 'GC03M138344', 'score': 0.31}, {'connected_gene': 'GC03P138407', 'score': 0.29}]
chr3 GH03I138381 138381296 138383117 1.39 [{'connected_gene': 'MRAS', 'score': 31.56}, {'connected_gene': 'NME9', 'score': 6.44}, {'connected_gene': 'ESYT3', 'score': 1.5}, {'connected_gene': 'GC03P138407', 'score': 0.31}, {'connected_gene': 'GC03M138344', 'score': 0.29}]
chr3 GH03I138368 138368730 138370733 0.2 [{'connected_gene': 'MRAS', 'score': 28.48}, {'connected_gene': 'NME9', 'score': 11.53}, {'connected_gene': 'PRR23C', 'score': 6.84}, {'connected_gene': 'GC03M138344', 'score': 0.37}, {'connected_gene': 'GC03P138407', 'score': 0.28}]
chr3 GH03I138393 138393846 138397865 0.31 [{'connected_gene': 'MRAS', 'score': 36.09}, {'connected_gene': 'NME9', 'score': 15.38}, {'connected_gene': 'GC03P138407', 'score': 0.39}, {'connected_gene': 'GC03M138344', 'score': 0.25}]
chr3 GH03I138389 138389060 138391257 1.12 [{'connected_gene': 'MRAS', 'score': 36.21}, {'connected_gene': 'NME9', 'score': 4.36}, {'connected_gene': 'GC03P138407', 'score': 0.37}, {'connected_gene': 'GC03M138344', 'score': 0.26}]
chr3 GH03I138371 138371054 138372790 0.68 [{'connected_gene': 'MRAS', 'score': 24.11}, {'connected_gene': 'NME9', 'score': 11.52}, {'connected_gene': 'GC03M138344', 'score': 0.34}, {'connected_gene': 'GC03P138407', 'score': 0.28}]
chr3 GH03I138385 138385673 138386410 0.31 [{'connected_gene': 'MRAS', 'score': 24.82}, {'connected_gene': 'NME9', 'score': 14.97}, {'connected_gene': 'GC03P138407', 'score': 0.34}, {'connected_gene': 'GC03M138344', 'score': 0.28}]
chr3 GH03I138386 138386717 138388440 0.38 [{'connected_gene': 'MRAS', 'score': 21.23}, {'connected_gene': 'NME9', 'score': 10.76}, {'connected_gene': 'GC03P138407', 'score': 0.37}, {'connected_gene': 'GC03M138344', 'score': 0.28}]
chr3 GH03I138398 138398802 138400004 0.97 [{'connected_gene': 'MRAS', 'score': 25.17}, {'connected_gene': 'NME9', 'score': 4.35}, {'connected_gene': 'GC03P138407', 'score': 0.44}, {'connected_gene': 'GC03M138344', 'score': 0.25}]
chr3 GH03I138401 138401665 138403317 0.2 [{'connected_gene': 'MRAS', 'score': 26.55}, {'connected_gene': 'NME9', 'score': 14.87}, {'connected_gene': 'GC03P138407', 'score': 0.77}, {'connected_gene': 'GC03M138344', 'score': 0.23}]
chr3 GH03I138338 138338350 138339426 0.58 [{'connected_gene': 'MRAS', 'score': 12.27}, {'connected_gene': 'NME9', 'score': 0.44}]
chr3 GH03I138118 138118800 138119148 0.83 [{'connected_gene': 'MRAS', 'score': 6.91}, {'connected_gene': 'DZIP1L', 'score': 0.77}, {'connected_gene': 'A4GNT', 'score': 0.39}]
chr3 GH03I138347 138347125 138351800 2.28 [{'connected_gene': 'MRAS', 'score': 561.61}, {'connected_gene': 'GC03M138344', 'score': 550.77}, {'connected_gene': 'PIR43849', 'score': 550.77}, {'connected_gene': 'DZIP1L', 'score': 15.73}, {'connected_gene': 'PRR23C', 'score': 4.5}]
chr3 GH03I138400 138400919 138401068 0.63 [{'connected_gene': 'MRAS', 'score': 11.14}, {'connected_gene': 'GC03P138407', 'score': 0.44}, {'connected_gene': 'GC03M138344', 'score': 0.23}]
chr3 GH03I138372 138372796 138373380 0.2 [{'connected_gene': 'MRAS', 'score': 12.01}, {'connected_gene': 'GC03M138344', 'score': 0.34}, {'connected_gene': 'GC03P138407', 'score': 0.29}]
chr3 GH03I138358 138358192 138359808 0.31 [{'connected_gene': 'DZIP1L', 'score': 14.08}, {'connected_gene': 'MRAS', 'score': 13.27}, {'connected_gene': 'NME9', 'score': 11.67}, {'connected_gene': 'PRR23C', 'score': 9.33}, {'connected_gene': 'GC03M138344', 'score': 0.44}, {'connected_gene': 'GC03P138407', 'score': 0.25}]
chr3 GH03I138356 138356074 138357766 0.51 [{'connected_gene': 'DZIP1L', 'score': 14.92}, {'connected_gene': 'MRAS', 'score': 11.91}, {'connected_gene': 'NME9', 'score': 11.67}, {'connected_gene': 'GC03M138344', 'score': 0.44}, {'connected_gene': 'GC03P138407', 'score': 0.23}]
chr3 GH03I138408 138408114 138409778 0.58 [{'connected_gene': 'LOC105374129', 'score': 550.77}, {'connected_gene': 'GC03P138407', 'score': 550.77}, {'connected_gene': 'MRAS', 'score': 10.93}, {'connected_gene': 'NME9', 'score': 4.38}]

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