PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295454	[[47033376, 47033748], [47033930, 47034022], [47034433, 47034501], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428461]]	[[47033668, 47033748], [47033930, 47034022], [47034433, 47034501], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428035]]
ENST00000510909	[[47033649, 47033748], [47033930, 47034022], [47163265, 47163486], [47322143, 47322226], [47405334, 47405402]]	[[47033668, 47033748], [47033930, 47034022], [47163265, 47163357]]
ENST00000538619	[[47033649, 47033748], [47033930, 47034022], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428157]]	[[47033992, 47034022], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428035]]
ENST00000513567	[[46995739, 46995943], [47033930, 47034022], [47034433, 47034501], [47163265, 47163477]]	[[47033949, 47034022], [47034433, 47034501], [47163265, 47163477]]
ENST00000509366	[[47033567, 47033748], [47033930, 47034022], [47034433, 47034501], [47045098, 47045362]]	None
ENST00000381582	[[47033597, 47033748], [47033930, 47034022], [47034433, 47035030]]	None
NM_000812	[[47033294, 47033748], [47033930, 47034022], [47034433, 47034501], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428462]]	[[47033668, 47033748], [47033930, 47034022], [47034433, 47034501], [47163265, 47163486], [47322143, 47322226], [47405334, 47405472], [47405575, 47405728], [47408698, 47408943], [47427690, 47428035]]

Promoter

Chrom	Start	End	Description
chr4	46995639	46995669	CAGE_peak_4_at_GABRB1_5end
chr4	46995689	46995706	CAGE_peak_7_at_GABRB1_5end
chr4	46995726	46995765	CAGE_peak_5_at_GABRB1_5end
chr4	47033345	47033367	CAGE_peak_3_at_GABRB1_5end
chr4	47033546	47033555	CAGE_peak_6_at_GABRB1_5end
chr4	47033568	47033603	CAGE_peak_1_at_GABRB1_5end
chr4	47033607	47033625	CAGE_peak_2_at_GABRB1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I047033	47031296	47031355	0.68	[{'connected_gene': 'GABRB1', 'score': 550.28}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]
chr4	GH04I046975	46975601	46976600	0.46	[{'connected_gene': 'GABRA4', 'score': 0.37}, {'connected_gene': 'GABRB1', 'score': 0.37}, {'connected_gene': 'GC04M046919', 'score': 0.23}]
chr4	GH04I046993	46993522	46993581	0.82	[{'connected_gene': 'GABRA4', 'score': 550.77}, {'connected_gene': 'GABRB1', 'score': 550.77}, {'connected_gene': 'GC04M046919', 'score': 0.19}]
chr4	GH04I047011	47011004	47011153	0.69	[{'connected_gene': 'COX7B2', 'score': 7.78}, {'connected_gene': 'GABRA4', 'score': 0.37}, {'connected_gene': 'GABRB1', 'score': 0.37}, {'connected_gene': 'LOC105374442', 'score': 0.17}]
chr4	GH04I047071	47071127	47072682	0.57	[{'connected_gene': 'LOC105374442', 'score': 0.34}, {'connected_gene': 'GABRA4', 'score': 0.18}, {'connected_gene': 'GABRB1', 'score': 0.18}]
chr4	GH04I047194	47194202	47195165	0.31	[{'connected_gene': 'GC04P047123', 'score': 0.19}, {'connected_gene': 'GC04P047331', 'score': 0.12}, {'connected_gene': 'GABRB1', 'score': 0.08}]
chr4	GH04I047212	47212325	47215206	0.52	[{'connected_gene': 'GC04P047123', 'score': 0.16}, {'connected_gene': 'GC04P047331', 'score': 0.13}, {'connected_gene': 'GABRB1', 'score': 0.07}]
chr4	GH04I047349	47349159	47349711	0.31	[{'connected_gene': 'GC04P047331', 'score': 0.37}, {'connected_gene': 'ENSG00000260918', 'score': 0.18}, {'connected_gene': 'GABRB1', 'score': 0.05}]
chr4	GH04I047208	47208667	47211654	0.46	[{'connected_gene': 'GC04P047123', 'score': 0.17}, {'connected_gene': 'GC04P047331', 'score': 0.13}, {'connected_gene': 'GABRB1', 'score': 0.08}]
chr4	GH04I047173	47173601	47174448	0.38	[{'connected_gene': 'GC04P047123', 'score': 0.23}, {'connected_gene': 'GC04P047331', 'score': 0.1}, {'connected_gene': 'GABRB1', 'score': 0.09}]
chr4	GH04I047031	47031400	47032201	0.68	[{'connected_gene': 'ENSG00000260918', 'score': 5.0}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'GABRB1', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]
chr4	GH04I047032	47032600	47032893	1.19	[{'connected_gene': 'ENSG00000260918', 'score': 4.92}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'GABRB1', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]