PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000302000	[[55831087, 55839345], [55841107, 55841193], [55881001, 55881145]]	[[55838220, 55839345], [55841107, 55841193], [55881001, 55881050]]
ENST00000563719	[[55836884, 55839345], [55841107, 55841193], [55880032, 55880138]]	[[55838220, 55839345], [55841107, 55841193], [55880032, 55880081]]
NM_001330326	[[55831078, 55837423], [55838202, 55839345], [55841107, 55841193], [55880032, 55880176]]	[[55838220, 55839345], [55841107, 55841193], [55880032, 55880081]]
NM_015617	[[55831081, 55839345], [55841107, 55841193], [55881001, 55881050]]	[[55838220, 55839345], [55841107, 55841193], [55881001, 55881050]]

Promoter

Chrom	Start	End	Description
chr15	55880535	55880561	CAGE_peak_2_at_PYGO1_5end
chr15	55880566	55880639	CAGE_peak_1_at_PYGO1_5end
chr15	55880642	55880681	CAGE_peak_4_at_PYGO1_5end
chr15	55881109	55881120	CAGE_peak_12_at_PYGO1_5end
chr15	55881135	55881192	CAGE_peak_3_at_PYGO1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I055248	55248602	55254343	1.53	[{'connected_gene': 'RAB27A', 'score': 13.57}, {'connected_gene': 'RSL24D1', 'score': 11.24}, {'connected_gene': 'PIGB', 'score': 6.24}, {'connected_gene': 'PYGO1', 'score': 4.77}, {'connected_gene': 'CCPG1', 'score': 4.24}, {'connected_gene': 'GC15M057438', 'score': 0.31}, {'connected_gene': 'GC15P055286', 'score': 0.29}]
chr15	GH15I056037	56037742	56044220	1.53	[{'connected_gene': 'ZNF280D', 'score': 48.6}, {'connected_gene': 'RSL24D1', 'score': 23.8}, {'connected_gene': 'TEX9', 'score': 21.36}, {'connected_gene': 'PYGO1', 'score': 21.28}, {'connected_gene': 'PRTG', 'score': 21.17}, {'connected_gene': 'RFX7', 'score': 20.34}, {'connected_gene': 'MNS1', 'score': 19.09}, {'connected_gene': 'TCF12', 'score': 12.6}, {'connected_gene': 'PIGBOS1', 'score': 11.12}, {'connected_gene': 'RN7SL568P', 'score': 0.39}, {'connected_gene': 'CD24P2', 'score': 0.29}]
chr15	GH15I055791	55791147	55792935	0.86	[{'connected_gene': 'PRTG', 'score': 11.34}, {'connected_gene': 'PYGO1', 'score': 9.82}, {'connected_gene': 'RSL24D1', 'score': 5.34}, {'connected_gene': 'GC15P055749', 'score': 0.26}, {'connected_gene': 'NEDD4', 'score': 0.08}]
chr15	GH15I055768	55768372	55769389	0.46	[{'connected_gene': 'PRTG', 'score': 35.34}, {'connected_gene': 'PYGO1', 'score': 9.95}, {'connected_gene': 'GC15P055749', 'score': 0.37}, {'connected_gene': 'NEDD4', 'score': 0.07}]
chr15	GH15I055783	55783872	55787521	0.49	[{'connected_gene': 'PRTG', 'score': 15.63}, {'connected_gene': 'PYGO1', 'score': 10.39}, {'connected_gene': 'GC15P055749', 'score': 0.28}, {'connected_gene': 'NEDD4', 'score': 0.08}]
chr15	GH15I055661	55661061	55662380	0.62	[{'connected_gene': 'PRTG', 'score': 21.66}, {'connected_gene': 'ENSG00000259180', 'score': 0.37}, {'connected_gene': 'PYGO1', 'score': 0.19}]
chr15	GH15I055630	55630233	55631592	0.31	[{'connected_gene': 'PRTG', 'score': 16.84}, {'connected_gene': 'PYGO1', 'score': 11.86}, {'connected_gene': 'ENSG00000259180', 'score': 0.25}]
chr15	GH15I055627	55627323	55628880	0.98	[{'connected_gene': 'PRTG', 'score': 20.57}, {'connected_gene': 'PYGO1', 'score': 12.23}, {'connected_gene': 'ENSG00000259180', 'score': 0.23}]
chr15	GH15I055652	55652483	55652632	0.38	[{'connected_gene': 'PRTG', 'score': 10.94}, {'connected_gene': 'PYGO1', 'score': 10.37}, {'connected_gene': 'ENSG00000259180', 'score': 0.31}]
chr15	GH15I055582	55582256	55582415	0.33	[{'connected_gene': 'PRTG', 'score': 11.4}, {'connected_gene': 'PYGO1', 'score': 0.44}, {'connected_gene': 'GC15M057442', 'score': 0.39}]
chr15	GH15I055823	55823303	55823532	0.93	[{'connected_gene': 'PYGO1', 'score': 14.36}, {'connected_gene': 'TEX9', 'score': 13.21}, {'connected_gene': 'PRTG', 'score': 12.04}, {'connected_gene': 'PIGBOS1', 'score': 11.13}, {'connected_gene': 'MNS1', 'score': 10.69}, {'connected_gene': 'GC15P055749', 'score': 0.19}, {'connected_gene': 'NEDD4', 'score': 0.09}]
chr15	GH15I055587	55587200	55589584	1.72	[{'connected_gene': 'PYGO1', 'score': 550.77}, {'connected_gene': 'PRTG', 'score': 8.87}, {'connected_gene': 'GC15M057442', 'score': 0.34}]
chr15	GH15I055648	55648401	55648800	0.89	[{'connected_gene': 'PYGO1', 'score': 11.02}, {'connected_gene': 'ENSG00000259180', 'score': 0.29}, {'connected_gene': 'PRTG', 'score': 0.15}]
chr15	GH15I055514	55514543	55514692	0.2	[{'connected_gene': 'PYGO1', 'score': 10.69}, {'connected_gene': 'DNAAF4', 'score': 0.44}, {'connected_gene': 'GC15M057430', 'score': 0.39}]
chr15	GH15I055552	55552301	55554131	0.69	[{'connected_gene': 'PYGO1', 'score': 5.44}, {'connected_gene': 'GC15M057412', 'score': 0.39}, {'connected_gene': 'GC15M057442', 'score': 0.37}]
chr15	GH15I055497	55497600	55499140	1.92	[{'connected_gene': 'DNAAF4', 'score': 556.74}, {'connected_gene': 'DNAAF4-CCPG1', 'score': 550.77}, {'connected_gene': 'RSL24D1', 'score': 13.48}, {'connected_gene': 'PYGO1', 'score': 11.65}, {'connected_gene': 'C15orf65', 'score': 10.38}, {'connected_gene': 'PIGB', 'score': 9.63}, {'connected_gene': 'LOC100420711', 'score': 0.22}]
chr15	GH15I055401	55401729	55409389	2.1	[{'connected_gene': 'C15orf65', 'score': 560.67}, {'connected_gene': 'CCPG1', 'score': 550.77}, {'connected_gene': 'RSL24D1', 'score': 23.81}, {'connected_gene': 'NEDD4', 'score': 11.87}, {'connected_gene': 'PYGO1', 'score': 11.58}, {'connected_gene': 'DNAAF4', 'score': 11.28}, {'connected_gene': 'PIGBOS1', 'score': 10.62}, {'connected_gene': 'PIGB', 'score': 7.14}, {'connected_gene': 'GC15M057427', 'score': 0.44}, {'connected_gene': 'DNAAF4-CCPG1', 'score': 0.16}]
chr15	GH15I055530	55530877	55531287	0.37	[{'connected_gene': 'GC15M057430', 'score': 550.77}, {'connected_gene': 'PYGO1', 'score': 5.12}, {'connected_gene': 'GC15M057412', 'score': 0.39}]