PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000382592	[[21547170, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620369], [21635484, 21635686]]	[[21549008, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620165]]
ENST00000542899	[[21549008, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620369], [21634268, 21634429]]	[[21549008, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620165]]
ENST00000472754	[[21563148, 21563443], [21565410, 21565543], [21597201, 21597268]]	None
NM_014572	[[21547174, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620369], [21635484, 21635722]]	[[21549008, 21549503], [21553829, 21553936], [21555604, 21555787], [21557362, 21557945], [21562019, 21563443], [21565410, 21565543], [21619823, 21620165]]

Promoter

Chrom	Start	End	Description
chr13	21634421	21634448	CAGE_peak_6_at_LATS2_5end
chr13	21634542	21634572	CAGE_peak_8_at_LATS2_5end
chr13	21635631	21635744	CAGE_peak_1_at_LATS2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I020942	20942963	20944251	1.3	[{'connected_gene': 'XPO4', 'score': 11.86}, {'connected_gene': 'LATS2-AS1', 'score': 11.5}, {'connected_gene': 'LATS2', 'score': 1.35}, {'connected_gene': 'HNRNPA1P30', 'score': 0.44}, {'connected_gene': 'LINC00367', 'score': 0.44}, {'connected_gene': 'CNOT4P1', 'score': 0.34}]
chr13	GH13I020975	20975342	20975491	0.2	[{'connected_gene': 'RPSAP54', 'score': 0.39}, {'connected_gene': 'LATS2-AS1', 'score': 0.31}, {'connected_gene': 'LATS2', 'score': 0.17}]
chr13	GH13I021123	21123385	21124362	0.38	[{'connected_gene': 'LATS2', 'score': 11.93}, {'connected_gene': 'MRPL57', 'score': 11.74}, {'connected_gene': 'SKA3', 'score': 11.74}, {'connected_gene': 'SAP18', 'score': 4.85}, {'connected_gene': 'GC13M021127', 'score': 0.77}, {'connected_gene': 'ENSG00000275689', 'score': 0.77}, {'connected_gene': 'IPPKP1', 'score': 0.37}]
chr13	GH13I021078	21078391	21081420	1.24	[{'connected_gene': 'LATS2', 'score': 14.46}, {'connected_gene': 'RPS12P23', 'score': 0.39}, {'connected_gene': 'LOC105370104', 'score': 0.39}]
chr13	GH13I021073	21073935	21076800	1.09	[{'connected_gene': 'LATS2', 'score': 10.34}, {'connected_gene': 'LOC105370104', 'score': 0.44}, {'connected_gene': 'RPS12P23', 'score': 0.37}]
chr13	GH13I021110	21110882	21111031	0.67	[{'connected_gene': 'LATS2', 'score': 12.45}, {'connected_gene': 'ENSG00000252128', 'score': 12.25}, {'connected_gene': 'SAP18', 'score': 12.25}, {'connected_gene': 'MRPL57', 'score': 11.46}, {'connected_gene': 'SKA3', 'score': 11.46}, {'connected_gene': 'LATS2-AS1', 'score': 11.19}, {'connected_gene': 'IPPKP1', 'score': 0.44}, {'connected_gene': 'GC13M021127', 'score': 0.37}, {'connected_gene': 'ENSG00000275689', 'score': 0.37}]
chr13	GH13I021022	21022383	21023946	0.95	[{'connected_gene': 'LATS2', 'score': 17.69}, {'connected_gene': 'ENSG00000252128', 'score': 10.63}, {'connected_gene': 'SAP18', 'score': 10.63}, {'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'LATS2-AS1', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}]
chr13	GH13I021021	21021002	21021740	0.4	[{'connected_gene': 'LATS2', 'score': 12.03}, {'connected_gene': 'ENSG00000252128', 'score': 10.34}, {'connected_gene': 'SAP18', 'score': 10.34}, {'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'LATS2-AS1', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}]
chr13	GH13I021032	21032602	21035560	0.94	[{'connected_gene': 'LATS2', 'score': 17.38}, {'connected_gene': 'LATS2-AS1', 'score': 12.15}, {'connected_gene': 'ENSG00000252128', 'score': 11.0}, {'connected_gene': 'SAP18', 'score': 11.0}, {'connected_gene': 'MRPL57', 'score': 10.57}, {'connected_gene': 'SKA3', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 9.24}, {'connected_gene': 'GC13M021039', 'score': 0.77}, {'connected_gene': 'RNU4-9P', 'score': 0.77}]
chr13	GH13I021053	21053065	21054567	0.52	[{'connected_gene': 'LATS2', 'score': 10.69}, {'connected_gene': 'LATS2-AS1', 'score': 10.59}, {'connected_gene': 'ENSG00000252128', 'score': 9.64}, {'connected_gene': 'SAP18', 'score': 9.64}, {'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}]
chr13	GH13I021043	21043134	21044631	1	[{'connected_gene': 'LATS2', 'score': 10.62}, {'connected_gene': 'GC13M021039', 'score': 0.44}, {'connected_gene': 'RNU4-9P', 'score': 0.44}]
chr13	GH13I021058	21058567	21058631	0.4	[{'connected_gene': 'LATS2', 'score': 0.77}, {'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}]
chr13	GH13I021059	21059474	21062691	2.21	[{'connected_gene': 'LATS2', 'score': 562.82}, {'connected_gene': 'GC13M021039', 'score': 0.34}, {'connected_gene': 'RNU4-9P', 'score': 0.34}]
chr13	GH13I021067	21067001	21067400	0.2	[{'connected_gene': 'LOC105370104', 'score': 550.77}, {'connected_gene': 'LATS2', 'score': 10.29}]
chr13	GH13I021105	21105583	21106814	0.51	[{'connected_gene': 'IPPKP1', 'score': 550.77}, {'connected_gene': 'LATS2', 'score': 20.43}, {'connected_gene': 'MRPL57', 'score': 11.65}, {'connected_gene': 'SKA3', 'score': 11.65}, {'connected_gene': 'RNU4-9P', 'score': 11.47}, {'connected_gene': 'LATS2-AS1', 'score': 11.37}, {'connected_gene': 'ENSG00000252128', 'score': 11.31}, {'connected_gene': 'SAP18', 'score': 11.31}, {'connected_gene': 'GC13M021127', 'score': 0.34}, {'connected_gene': 'ENSG00000275689', 'score': 0.34}]
chr13	GH13I020996	20996655	20999380	0.94	[{'connected_gene': 'LATS2-AS1', 'score': 0.44}, {'connected_gene': 'RPSAP54', 'score': 0.28}, {'connected_gene': 'LATS2', 'score': 0.21}]
chr13	GH13I021004	21004445	21005345	0.31	[{'connected_gene': 'LATS2-AS1', 'score': 550.77}, {'connected_gene': 'LATS2', 'score': 5.41}, {'connected_gene': 'RPSAP54', 'score': 0.26}]
chr13	GH13I021031	21031601	21031800	0.2	[{'connected_gene': 'LATS2-AS1', 'score': 12.15}, {'connected_gene': 'LATS2', 'score': 12.05}, {'connected_gene': 'ENSG00000252128', 'score': 11.0}, {'connected_gene': 'SAP18', 'score': 11.0}, {'connected_gene': 'MRPL57', 'score': 10.57}, {'connected_gene': 'SKA3', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 9.24}, {'connected_gene': 'GC13M021039', 'score': 0.44}, {'connected_gene': 'RNU4-9P', 'score': 0.44}]
chr13	GH13I021035	21035601	21035800	0.51	[{'connected_gene': 'LATS2-AS1', 'score': 12.13}, {'connected_gene': 'LATS2', 'score': 12.05}, {'connected_gene': 'ENSG00000252128', 'score': 11.0}, {'connected_gene': 'SAP18', 'score': 11.0}, {'connected_gene': 'MRPL57', 'score': 10.57}, {'connected_gene': 'SKA3', 'score': 10.57}, {'connected_gene': 'CRYL1', 'score': 9.24}, {'connected_gene': 'GC13M021039', 'score': 0.77}, {'connected_gene': 'RNU4-9P', 'score': 0.77}]
chr13	GH13I021054	21054654	21056208	0.58	[{'connected_gene': 'LATS2-AS1', 'score': 10.58}, {'connected_gene': 'LATS2', 'score': 9.77}, {'connected_gene': 'ENSG00000252128', 'score': 9.65}, {'connected_gene': 'SAP18', 'score': 9.64}, {'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}]
chr13	GH13I021049	21049022	21049171	0.31	[{'connected_gene': 'LATS2-AS1', 'score': 11.64}, {'connected_gene': 'GC13M021039', 'score': 0.39}, {'connected_gene': 'LATS2', 'score': 0.39}, {'connected_gene': 'RNU4-9P', 'score': 0.39}]
chr13	GH13I021050	21050626	21051084	0.63	[{'connected_gene': 'LATS2-AS1', 'score': 11.63}, {'connected_gene': 'LATS2', 'score': 9.74}, {'connected_gene': 'GC13M021039', 'score': 0.39}, {'connected_gene': 'RNU4-9P', 'score': 0.39}]
chr13	GH13I021046	21046823	21047700	0.43	[{'connected_gene': 'LATS2-AS1', 'score': 11.64}, {'connected_gene': 'LATS2', 'score': 10.5}, {'connected_gene': 'GC13M021039', 'score': 0.44}, {'connected_gene': 'RNU4-9P', 'score': 0.44}]
chr13	GH13I021051	21049182	21049211	0.31	[{'connected_gene': 'LATS2-AS1', 'score': 11.64}, {'connected_gene': 'GC13M021039', 'score': 0.39}, {'connected_gene': 'LATS2', 'score': 0.39}, {'connected_gene': 'RNU4-9P', 'score': 0.39}]
chr13	GH13I021045	21045201	21045600	0.51	[{'connected_gene': 'LATS2-AS1', 'score': 11.64}, {'connected_gene': 'GC13M021039', 'score': 0.44}, {'connected_gene': 'RNU4-9P', 'score': 0.44}, {'connected_gene': 'LATS2', 'score': 0.37}]
chr13	GH13I021068	21068988	21072177	1.24	[{'connected_gene': 'RNU2-7P', 'score': 11.15}, {'connected_gene': 'LATS2', 'score': 9.54}, {'connected_gene': 'CRYL1', 'score': 4.22}, {'connected_gene': 'LOC105370104', 'score': 0.77}, {'connected_gene': 'RPS12P23', 'score': 0.34}]
chr13	GH13I020993	20993203	20994209	1.03	[{'connected_gene': 'RNU4-9P', 'score': 11.46}, {'connected_gene': 'ENSG00000252128', 'score': 10.49}, {'connected_gene': 'SAP18', 'score': 10.49}, {'connected_gene': 'LATS2-AS1', 'score': 0.39}, {'connected_gene': 'RPSAP54', 'score': 0.29}, {'connected_gene': 'LATS2', 'score': 0.2}]
chr13	GH13I021010	21010260	21018800	1.35	[{'connected_gene': 'RPS7P10', 'score': 12.61}, {'connected_gene': 'RNU2-7P', 'score': 10.04}, {'connected_gene': 'LATS2', 'score': 5.83}, {'connected_gene': 'LATS2-AS1', 'score': 0.44}, {'connected_gene': 'GC13M021039', 'score': 0.34}, {'connected_gene': 'RNU4-9P', 'score': 0.34}]
chr13	GH13I021124	21124702	21125201	0.79	[{'connected_gene': 'GC13M021127', 'score': 550.77}, {'connected_gene': 'ENSG00000275689', 'score': 550.77}, {'connected_gene': 'LATS2', 'score': 11.93}, {'connected_gene': 'MRPL57', 'score': 11.74}, {'connected_gene': 'SKA3', 'score': 11.74}, {'connected_gene': 'IPPKP1', 'score': 0.34}]
chr13	GH13I020989	20989077	20990331	0.2	[{'connected_gene': 'ENSG00000252128', 'score': 10.33}, {'connected_gene': 'SAP18', 'score': 10.33}, {'connected_gene': 'LATS2-AS1', 'score': 0.37}, {'connected_gene': 'RPSAP54', 'score': 0.31}, {'connected_gene': 'LATS2', 'score': 0.19}]
chr13	GH13I020990	20990650	20992317	0.38	[{'connected_gene': 'ENSG00000252128', 'score': 10.34}, {'connected_gene': 'SAP18', 'score': 10.34}, {'connected_gene': 'LATS2-AS1', 'score': 0.39}, {'connected_gene': 'RPSAP54', 'score': 0.29}, {'connected_gene': 'LATS2', 'score': 0.19}]
chr13	GH13I021020	21020801	21021000	0.4	[{'connected_gene': 'GC13M021039', 'score': 0.37}, {'connected_gene': 'LATS2-AS1', 'score': 0.37}, {'connected_gene': 'RNU4-9P', 'score': 0.37}, {'connected_gene': 'LATS2', 'score': 0.26}]
chr13	GH13I021038	21038002	21041828	0.97	[{'connected_gene': 'GC13M021039', 'score': 550.77}, {'connected_gene': 'RNU4-9P', 'score': 550.77}, {'connected_gene': 'LATS2', 'score': 21.96}, {'connected_gene': 'LATS2-AS1', 'score': 12.13}, {'connected_gene': 'ENSG00000252128', 'score': 11.0}, {'connected_gene': 'SAP18', 'score': 11.0}, {'connected_gene': 'MRPL57', 'score': 10.58}, {'connected_gene': 'SKA3', 'score': 10.58}, {'connected_gene': 'CRYL1', 'score': 9.24}]