PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000433211	[[67672275, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69455757, 69455927]]	[[67680087, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
ENST00000373744	[[67679776, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]	[[67680087, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
ENST00000545309	[[68936658, 68936742], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]	[[68936658, 68936742], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
ENST00000373735	[[67679868, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67838708, 67838861]]	None
ENST00000494580	[[68525912, 68526174], [68535201, 68535282], [68940074, 68940201]]	[[68526000, 68526174], [68535201, 68535282], [68940074, 68940201]]
ENST00000330298	[[69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69425298, 69425410]]	[[69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
NM_001127384	[[67672275, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69425298, 69425443]]	[[67680087, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
NM_013266	[[67672275, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69455757, 69455949]]	[[67680087, 67680375], [67726369, 67726504], [67748449, 67748555], [67829065, 67829247], [67862914, 67863007], [68040227, 68040379], [68138909, 68139110], [68280374, 68280531], [68381449, 68381542], [68526021, 68526174], [68535201, 68535282], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407271]]
NM_001291133	[[68935242, 68936742], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69408497, 69408574], [69425298, 69425443]]	[[68936658, 68936742], [68940074, 68940278], [68979364, 68979628], [69281599, 69281719], [69299260, 69299427], [69366614, 69366807], [69407172, 69407276], [69408497, 69408528]]

Promoter

Chrom	Start	End	Description
chr10	69425322	69425357	CAGE_peak_3_at_CTNNA3_5end
chr10	69425360	69425371	CAGE_peak_5_at_CTNNA3_5end
chr10	69425374	69425385	CAGE_peak_4_at_CTNNA3_5end
chr10	69425399	69425449	CAGE_peak_1_at_CTNNA3_5end
chr10	69455873	69455960	CAGE_peak_2_at_CTNNA3_5end
chr10	69455965	69455974	CAGE_peak_6_at_CTNNA3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I067042	67042354	67042543	0.22	[{'connected_gene': 'LRRTM3', 'score': 6.52}, {'connected_gene': 'GC10P067038', 'score': 0.77}, {'connected_gene': 'ENSG00000225299', 'score': 0.39}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067104	67104221	67104392	0.22	[{'connected_gene': 'LRRTM3', 'score': 5.73}, {'connected_gene': 'GC10P067108', 'score': 0.77}, {'connected_gene': 'ENSG00000225299', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067073	67072022	67072225	0.23	[{'connected_gene': 'LRRTM3', 'score': 4.08}, {'connected_gene': 'ENSG00000225299', 'score': 0.37}, {'connected_gene': 'GC10P067108', 'score': 0.28}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067072	67072501	67072755	0.24	[{'connected_gene': 'LRRTM3', 'score': 3.26}, {'connected_gene': 'ENSG00000225299', 'score': 0.34}, {'connected_gene': 'GC10P067108', 'score': 0.28}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067043	67042782	67043494	0.28	[{'connected_gene': 'LRRTM3', 'score': 7.94}, {'connected_gene': 'GC10P067038', 'score': 0.77}, {'connected_gene': 'ENSG00000225299', 'score': 0.44}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067002	67002513	67002703	0.22	[{'connected_gene': 'LRRTM3', 'score': 3.97}, {'connected_gene': 'LOC101928961', 'score': 0.44}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066995	66995431	66995535	0.25	[{'connected_gene': 'LRRTM3', 'score': 6.29}, {'connected_gene': 'LOC101928961', 'score': 0.37}, {'connected_gene': 'CTNNA3', 'score': 0.02}]
chr10	GH10I066941	66941643	66941792	0.2	[{'connected_gene': 'LRRTM3', 'score': 0.37}, {'connected_gene': 'LOC101928961', 'score': 0.19}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066925	66925492	66926534	1.24	[{'connected_gene': 'LRRTM3', 'score': 550.77}, {'connected_gene': 'LOC101928961', 'score': 0.17}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066928	66928001	66928400	0.51	[{'connected_gene': 'LRRTM3', 'score': 0.77}, {'connected_gene': 'LOC101928961', 'score': 0.18}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066931	66931503	66931632	0.6	[{'connected_gene': 'LRRTM3', 'score': 0.44}, {'connected_gene': 'LOC101928961', 'score': 0.18}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066951	66951526	66952472	0.2	[{'connected_gene': 'LRRTM3', 'score': 0.31}, {'connected_gene': 'LOC101928961', 'score': 0.21}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066969	66969203	66969598	0.22	[{'connected_gene': 'LRRTM3', 'score': 2.84}, {'connected_gene': 'LOC101928961', 'score': 0.26}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066993	66993686	66993883	0.22	[{'connected_gene': 'LRRTM3', 'score': 3.97}, {'connected_gene': 'LOC101928961', 'score': 0.37}, {'connected_gene': 'CTNNA3', 'score': 0.02}]
chr10	GH10I066957	66957626	66959964	0.42	[{'connected_gene': 'LRRTM3', 'score': 3.37}, {'connected_gene': 'LOC101928961', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066960	66960523	66960928	0.22	[{'connected_gene': 'LRRTM3', 'score': 5.93}, {'connected_gene': 'LOC101928961', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066950	66950794	66951052	0.22	[{'connected_gene': 'LRRTM3', 'score': 6.24}, {'connected_gene': 'LOC101928961', 'score': 0.21}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066961	66961557	66962106	0.27	[{'connected_gene': 'LRRTM3', 'score': 10.05}, {'connected_gene': 'LOC101928961', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067008	67008962	67009263	0.24	[{'connected_gene': 'LRRTM3', 'score': 4.84}, {'connected_gene': 'LOC101928961', 'score': 0.77}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067665	67665623	67665772	0.49	[{'connected_gene': 'AKR1B10P1', 'score': 0.18}, {'connected_gene': 'CTNNA3', 'score': 0.15}, {'connected_gene': 'PIR34883', 'score': 0.1}]
chr10	GH10I067629	67629523	67629692	0.56	[{'connected_gene': 'AKR1B10P1', 'score': 0.13}, {'connected_gene': 'PIR34883', 'score': 0.12}, {'connected_gene': 'CTNNA3', 'score': 0.12}]
chr10	GH10I067666	67666603	67666692	0.68	[{'connected_gene': 'AKR1B10P1', 'score': 0.18}, {'connected_gene': 'CTNNA3', 'score': 0.15}, {'connected_gene': 'PIR34883', 'score': 0.1}]
chr10	GH10I067667	67665560	67665619	0.79	[{'connected_gene': 'CTNNA3', 'score': 550.15}, {'connected_gene': 'AKR1B10P1', 'score': 0.18}, {'connected_gene': 'PIR34883', 'score': 0.1}]
chr10	GH10I067696	67696142	67696201	0.61	[{'connected_gene': 'CTNNA3', 'score': 550.2}, {'connected_gene': 'AKR1B10P1', 'score': 0.23}, {'connected_gene': 'PIR34883', 'score': 0.08}]
chr10	GH10I067601	67601997	67603519	0.52	[{'connected_gene': 'CTNNA3', 'score': 17.73}, {'connected_gene': 'PIR34883', 'score': 0.14}, {'connected_gene': 'AKR1B10P1', 'score': 0.11}]
chr10	GH10I067521	67521043	67521172	0.57	[{'connected_gene': 'CTNNA3', 'score': 6.63}, {'connected_gene': 'PIR34883', 'score': 0.34}, {'connected_gene': 'AKR1B10P1', 'score': 0.07}]
chr10	GH10I067606	67606223	67608146	0.59	[{'connected_gene': 'CTNNA3', 'score': 18.07}, {'connected_gene': 'PIR34883', 'score': 0.14}, {'connected_gene': 'AKR1B10P1', 'score': 0.11}]
chr10	GH10I067761	67761748	67762162	0.38	[{'connected_gene': 'CTNNA3', 'score': 550.77}, {'connected_gene': 'AKR1B10P1', 'score': 0.39}]
chr10	GH10I067770	67770418	67773660	1	[{'connected_gene': 'CTNNA3', 'score': 10.21}, {'connected_gene': 'SIRT1', 'score': 7.98}, {'connected_gene': 'ATOH7', 'score': 5.32}, {'connected_gene': 'TRS-TGA1-1', 'score': 0.44}, {'connected_gene': 'RPL21P92', 'score': 0.34}]
chr10	GH10I067763	67763062	67765648	1.28	[{'connected_gene': 'CTNNA3', 'score': 558.68}, {'connected_gene': 'TRS-TGA1-1', 'score': 550.77}, {'connected_gene': 'CCAR1', 'score': 29.23}, {'connected_gene': 'HNRNPH3', 'score': 24.68}, {'connected_gene': 'HERC4', 'score': 20.39}, {'connected_gene': 'SIRT1', 'score': 12.6}, {'connected_gene': 'RUFY2', 'score': 11.55}, {'connected_gene': 'RPL26P27', 'score': 10.98}, {'connected_gene': 'TET1', 'score': 10.03}]
chr10	GH10I067762	67762801	67763000	0.2	[{'connected_gene': 'CTNNA3', 'score': 550.77}, {'connected_gene': 'TRS-TGA1-1', 'score': 550.77}, {'connected_gene': 'AKR1B10P1', 'score': 0.39}]
chr10	GH10I067780	67780003	67780192	0.77	[{'connected_gene': 'CTNNA3', 'score': 9.12}, {'connected_gene': 'RPL21P92', 'score': 0.39}, {'connected_gene': 'TRS-TGA1-1', 'score': 0.37}]
chr10	GH10I067492	67492383	67492712	0.62	[{'connected_gene': 'CTNNA3', 'score': 7.49}, {'connected_gene': 'PIR34883', 'score': 0.44}, {'connected_gene': 'PIR36242', 'score': 0.39}]
chr10	GH10I067697	67697763	67697932	0.59	[{'connected_gene': 'HERC4', 'score': 11.51}, {'connected_gene': 'RPL26P27', 'score': 10.07}, {'connected_gene': 'RPL12P8', 'score': 9.87}, {'connected_gene': 'HNRNPH3', 'score': 9.76}, {'connected_gene': 'AKR1B10P1', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.2}, {'connected_gene': 'PIR34883', 'score': 0.08}]
chr10	GH10I067802	67802733	67804412	0.92	[{'connected_gene': 'SIRT1', 'score': 15.96}, {'connected_gene': 'HNRNPH3', 'score': 10.51}, {'connected_gene': 'HERC4', 'score': 9.82}, {'connected_gene': 'CTNNA3', 'score': 5.71}, {'connected_gene': 'GC10P067809', 'score': 0.77}, {'connected_gene': 'GC10P067794', 'score': 0.44}, {'connected_gene': 'DNAJC12', 'score': 0.29}]
chr10	GH10I067860	67860690	67863572	0.8	[{'connected_gene': 'SIRT1', 'score': 20.45}, {'connected_gene': 'CTNNA3', 'score': 4.13}, {'connected_gene': 'RNU6-523P', 'score': 0.77}, {'connected_gene': 'RPL12P8', 'score': 0.39}]
chr10	GH10I067240	67240353	67242815	0.69	[{'connected_gene': 'ATOH7', 'score': 5.47}, {'connected_gene': 'PIR38309', 'score': 0.18}, {'connected_gene': 'RPL7AP51', 'score': 0.16}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067438	67438775	67439732	0.31	[{'connected_gene': 'MIR7151', 'score': 0.28}, {'connected_gene': 'PIR36242', 'score': 0.26}, {'connected_gene': 'CTNNA3', 'score': 0.05}]
chr10	GH10I067401	67401863	67402052	0.38	[{'connected_gene': 'MIR7151', 'score': 550.77}, {'connected_gene': 'RPL7AP51', 'score': 0.2}, {'connected_gene': 'CTNNA3', 'score': 0.05}]
chr10	GH10I067387	67387002	67387599	0.38	[{'connected_gene': 'MIR7151', 'score': 0.37}, {'connected_gene': 'RPL7AP51', 'score': 0.23}, {'connected_gene': 'CTNNA3', 'score': 0.05}]
chr10	GH10I067330	67330585	67331671	0.2	[{'connected_gene': 'RPL7AP51', 'score': 0.77}, {'connected_gene': 'PIR38309', 'score': 0.09}, {'connected_gene': 'CTNNA3', 'score': 0.04}]
chr10	GH10I067259	67259423	67259532	0.63	[{'connected_gene': 'RPL7AP51', 'score': 0.19}, {'connected_gene': 'PIR38309', 'score': 0.15}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067076	67076303	67076452	0.49	[{'connected_gene': 'ENSG00000225299', 'score': 0.34}, {'connected_gene': 'GC10P067108', 'score': 0.29}, {'connected_gene': 'LRRTM3', 'score': 0.1}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066837	66837642	66838723	0.38	[{'connected_gene': 'ENSG00000277056', 'score': 550.77}, {'connected_gene': 'LRRTM3', 'score': 0.17}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066877	66877035	66878046	0.2	[{'connected_gene': 'ENSG00000277056', 'score': 0.26}, {'connected_gene': 'LRRTM3', 'score': 0.25}, {'connected_gene': 'CTNNA3', 'score': 0.02}]
chr10	GH10I067036	67036976	67037225	0.22	[{'connected_gene': 'GC10P067037', 'score': 550.77}, {'connected_gene': 'GC10P067038', 'score': 550.77}, {'connected_gene': 'LRRTM3', 'score': 3.73}, {'connected_gene': 'LOC101928961', 'score': 0.34}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067610	67610143	67610292	0.2	[{'connected_gene': 'PIR34883', 'score': 0.14}, {'connected_gene': 'AKR1B10P1', 'score': 0.11}, {'connected_gene': 'CTNNA3', 'score': 0.1}]
chr10	GH10I067613	67613123	67613432	0.7	[{'connected_gene': 'PIR34883', 'score': 0.13}, {'connected_gene': 'AKR1B10P1', 'score': 0.12}, {'connected_gene': 'CTNNA3', 'score': 0.1}]
chr10	GH10I066804	66804624	66805498	0.43	[{'connected_gene': 'ENSG00000277056', 'score': 0.29}, {'connected_gene': 'GC10P066636', 'score': 0.1}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066836	66836102	66836315	0.46	[{'connected_gene': 'ENSG00000277056', 'score': 550.77}, {'connected_gene': 'GC10P066636', 'score': 0.08}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066782	66782913	66783526	0.2	[{'connected_gene': 'ENSG00000277056', 'score': 0.23}, {'connected_gene': 'GC10P066636', 'score': 0.11}, {'connected_gene': 'CTNNA3', 'score': 0.02}]
chr10	GH10I067115	67115043	67115192	0.74	[{'connected_gene': 'GC10P067108', 'score': 0.44}, {'connected_gene': 'PIR38309', 'score': 0.26}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I066799	66799602	66799799	0.31	[{'connected_gene': 'ENSG00000277056', 'score': 0.28}, {'connected_gene': 'GC10P066636', 'score': 0.1}, {'connected_gene': 'CTNNA3', 'score': 0.03}]
chr10	GH10I067230	67230340	67231400	0.83	[{'connected_gene': 'PIR38309', 'score': 0.19}, {'connected_gene': 'RPL7AP51', 'score': 0.15}, {'connected_gene': 'CTNNA3', 'score': 0.03}]