PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000393593	[[185308866, 185310220], [185311856, 185311903], [185320068, 185320233], [185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350224], [185395532, 185395734]]	[[185309911, 185310220], [185311856, 185311903], [185320068, 185320233], [185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350218]]
ENST00000505067	[[185310175, 185310220], [185311856, 185311903], [185320068, 185320233], [185328332, 185328437], [185329311, 185329429], [185339320, 185339367], [185339685, 185339744]]	[[185310175, 185310220], [185311856, 185311903], [185320068, 185320233], [185328332, 185328437], [185329311, 185329429], [185339320, 185339367], [185339685, 185339744]]
ENST00000502750	[[185310193, 185310220], [185311856, 185311903], [185320068, 185320233], [185339685, 185339785]]	[[185310193, 185310220], [185311856, 185311903], [185320068, 185320233], [185339685, 185339785]]
ENST00000507523	[[185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350224], [185395143, 185395203]]	[[185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350218]]
ENST00000512020	[[185329312, 185329429], [185339320, 185339367], [185339658, 185339862], [185340622, 185340722], [185350131, 185350224], [185395532, 185395702]]	None
ENST00000510814	[[185329358, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350224], [185395122, 185395202]]	[[185329358, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350218]]
ENST00000506230	[[185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350224], [185395259, 185395340]]	[[185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350218]]
ENST00000509274	[[185339328, 185339367], [185339685, 185339862], [185340622, 185340722], [185349827, 185349951], [185350131, 185350224], [185395143, 185395201]]	[[185340681, 185340722], [185349827, 185349951], [185350131, 185350218]]
ENST00000504340	[[185369809, 185370204], [185395532, 185395702]]	None
NM_002199	[[185308875, 185310220], [185311856, 185311903], [185320068, 185320233], [185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350224], [185395532, 185395726]]	[[185309911, 185310220], [185311856, 185311903], [185320068, 185320233], [185329311, 185329429], [185339320, 185339367], [185339685, 185339862], [185340622, 185340722], [185350131, 185350218]]

Promoter

Chrom	Start	End	Description
chr4	185395191	185395226	CAGE_peak_4_at_IRF2_5end
chr4	185395590	185395627	CAGE_peak_3_at_IRF2_5end
chr4	185395633	185395651	CAGE_peak_2_at_IRF2_5end
chr4	185395672	185395710	CAGE_peak_1_at_IRF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I184287	184287288	184289451	1.57	[{'connected_gene': 'CASP3', 'score': 14.51}, {'connected_gene': 'IRF2', 'score': 14.21}, {'connected_gene': 'ENSG00000251878', 'score': 11.16}, {'connected_gene': 'PRIMPOL', 'score': 10.29}, {'connected_gene': 'LINC02363', 'score': 9.68}, {'connected_gene': 'MYL12BP2', 'score': 6.1}, {'connected_gene': 'ENPP6', 'score': 5.62}, {'connected_gene': 'CENPU', 'score': 4.93}, {'connected_gene': 'LOC105377582', 'score': 0.44}, {'connected_gene': 'RN7SL28P', 'score': 0.44}]
chr4	GH04I184667	184667784	184670020	0.86	[{'connected_gene': 'CENPU', 'score': 15.02}, {'connected_gene': 'ACSL1', 'score': 10.4}, {'connected_gene': 'PRIMPOL', 'score': 8.95}, {'connected_gene': 'IRF2', 'score': 7.43}, {'connected_gene': 'GC04P184696', 'score': 0.31}]
chr4	GH04I184854	184854246	184856848	1.44	[{'connected_gene': 'MIR3945HG', 'score': 550.77}, {'connected_gene': 'ACSL1', 'score': 19.22}, {'connected_gene': 'CENPU', 'score': 5.66}, {'connected_gene': 'IRF2', 'score': 4.27}, {'connected_gene': 'MIR3945', 'score': 0.77}]
chr4	GH04I184309	184309887	184312124	1.47	[{'connected_gene': 'LINC02363', 'score': 9.36}, {'connected_gene': 'CASP3', 'score': 1.83}, {'connected_gene': 'IRF2', 'score': 1.46}, {'connected_gene': 'GC04P184303', 'score': 0.44}]
chr4	GH04I184326	184326758	184333189	1.6	[{'connected_gene': 'LINC02363', 'score': 16.32}, {'connected_gene': 'MYL12BP2', 'score': 13.71}, {'connected_gene': 'ACSL1', 'score': 6.16}, {'connected_gene': 'IRF2', 'score': 2.95}, {'connected_gene': 'GC04P184303', 'score': 0.31}]
chr4	GH04I184342	184342058	184350884	1.74	[{'connected_gene': 'LINC02363', 'score': 21.98}, {'connected_gene': 'IRF2', 'score': 15.26}, {'connected_gene': 'ENSG00000251878', 'score': 11.29}, {'connected_gene': 'CASP3', 'score': 10.76}, {'connected_gene': 'PRIMPOL', 'score': 10.76}, {'connected_gene': 'CFAP97', 'score': 4.77}, {'connected_gene': 'ACSL1', 'score': 3.39}, {'connected_gene': 'GC04P184303', 'score': 0.26}]
chr4	GH04I184280	184280197	184284698	1.59	[{'connected_gene': 'MYL12BP2', 'score': 14.28}, {'connected_gene': 'ENSG00000251878', 'score': 11.38}, {'connected_gene': 'LINC02363', 'score': 10.01}, {'connected_gene': 'ENPP6', 'score': 4.87}, {'connected_gene': 'CENPU', 'score': 4.57}, {'connected_gene': 'CASP3', 'score': 1.61}, {'connected_gene': 'IRF2', 'score': 1.49}, {'connected_gene': 'RN7SL28P', 'score': 0.77}, {'connected_gene': 'LOC105377582', 'score': 0.39}]
chr4	GH04I184313	184313115	184316570	1.52	[{'connected_gene': 'MYL12BP2', 'score': 12.21}, {'connected_gene': 'IRF2', 'score': 11.37}, {'connected_gene': 'ENSG00000251878', 'score': 11.2}, {'connected_gene': 'LINC02363', 'score': 9.84}, {'connected_gene': 'ENPP6', 'score': 6.57}, {'connected_gene': 'CASP3', 'score': 1.29}, {'connected_gene': 'GC04P184303', 'score': 0.39}]
chr4	GH04I184334	184333499	184333669	0.46	[{'connected_gene': 'MYL12BP2', 'score': 13.41}, {'connected_gene': 'ACSL1', 'score': 3.6}, {'connected_gene': 'IRF2', 'score': 2.78}, {'connected_gene': 'CASP3', 'score': 1.23}, {'connected_gene': 'LINC02363', 'score': 0.34}, {'connected_gene': 'GC04P184303', 'score': 0.29}]
chr4	GH04I184318	184318759	184320034	1.26	[{'connected_gene': 'IRF2', 'score': 12.8}, {'connected_gene': 'ENSG00000251878', 'score': 10.84}, {'connected_gene': 'CASP3', 'score': 1.38}, {'connected_gene': 'GC04P184303', 'score': 0.37}, {'connected_gene': 'LINC02363', 'score': 0.29}]
chr4	GH04I184419	184419655	184422442	1.39	[{'connected_gene': 'IRF2', 'score': 13.59}, {'connected_gene': 'CASP3', 'score': 11.21}, {'connected_gene': 'PRIMPOL', 'score': 9.84}, {'connected_gene': 'ACSL1', 'score': 1.23}, {'connected_gene': 'GC04P184432', 'score': 0.39}, {'connected_gene': 'LINC02362', 'score': 0.28}]
chr4	GH04I183995	183995590	183995790	0.41	[{'connected_gene': 'IRF2', 'score': 2.72}, {'connected_gene': 'TRAPPC11', 'score': 1.61}, {'connected_gene': 'ENSG00000248206', 'score': 0.44}, {'connected_gene': 'ENSG00000283355', 'score': 0.37}, {'connected_gene': 'STOX2', 'score': 0.08}]
chr4	GH04I184470	184470627	184477334	2.53	[{'connected_gene': 'IRF2', 'score': 554.72}, {'connected_gene': 'ENSG00000271646', 'score': 550.77}, {'connected_gene': 'ENSG00000270426', 'score': 550.77}, {'connected_gene': 'TRAPPC11', 'score': 21.72}, {'connected_gene': 'PRIMPOL', 'score': 21.38}, {'connected_gene': 'CASP3', 'score': 11.75}, {'connected_gene': 'SNX25', 'score': 11.07}, {'connected_gene': 'ACSL1', 'score': 5.64}]
chr4	GH04I184265	184265302	184269283	1.66	[{'connected_gene': 'IRF2', 'score': 15.96}, {'connected_gene': 'MYL12BP2', 'score': 14.59}, {'connected_gene': 'CASP3', 'score': 12.99}, {'connected_gene': 'TRAPPC11', 'score': 12.95}, {'connected_gene': 'ENSG00000251878', 'score': 10.72}, {'connected_gene': 'PRIMPOL', 'score': 10.0}, {'connected_gene': 'LINC02363', 'score': 9.83}, {'connected_gene': 'LOC105377584', 'score': 0.77}, {'connected_gene': 'RN7SL28P', 'score': 0.39}, {'connected_gene': 'LOC105377582', 'score': 0.31}]
chr4	GH04I184416	184416177	184419357	1.41	[{'connected_gene': 'IRF2', 'score': 15.79}, {'connected_gene': 'PRIMPOL', 'score': 9.83}, {'connected_gene': 'CASP3', 'score': 9.83}, {'connected_gene': 'ACSL1', 'score': 4.19}, {'connected_gene': 'GC04P184432', 'score': 0.39}, {'connected_gene': 'LINC02362', 'score': 0.28}]
chr4	GH04I184414	184414963	184415697	0.2	[{'connected_gene': 'IRF2', 'score': 12.18}, {'connected_gene': 'PRIMPOL', 'score': 9.83}, {'connected_gene': 'CASP3', 'score': 9.83}, {'connected_gene': 'GC04P184432', 'score': 0.37}, {'connected_gene': 'LINC02362', 'score': 0.29}]
chr4	GH04I184506	184506277	184507563	0.6	[{'connected_gene': 'IRF2', 'score': 11.87}, {'connected_gene': 'ENSG00000251878', 'score': 10.54}, {'connected_gene': 'LINC02427', 'score': 4.77}, {'connected_gene': 'GC04M184536', 'score': 0.29}, {'connected_gene': 'ENSG00000271646', 'score': 0.29}]
chr4	GH04I184381	184381357	184388699	2.26	[{'connected_gene': 'IRF2', 'score': 14.69}, {'connected_gene': 'ENSG00000251878', 'score': 11.34}, {'connected_gene': 'LINC02362', 'score': 6.31}, {'connected_gene': 'RWDD4', 'score': 5.89}, {'connected_gene': 'ACSL1', 'score': 5.11}, {'connected_gene': 'GC04P184432', 'score': 0.25}]
chr4	GH04I184446	184446001	184446400	0.4	[{'connected_gene': 'IRF2', 'score': 12.68}, {'connected_gene': 'ENSG00000251878', 'score': 0.39}, {'connected_gene': 'GC04M184456', 'score': 0.39}]
chr4	GH04I184503	184503596	184504807	0.63	[{'connected_gene': 'IRF2', 'score': 11.89}, {'connected_gene': 'ENSG00000251878', 'score': 10.54}, {'connected_gene': 'ENSG00000271646', 'score': 0.31}, {'connected_gene': 'GC04M184536', 'score': 0.29}]
chr4	GH04I184444	184444484	184445599	0.97	[{'connected_gene': 'IRF2', 'score': 12.68}, {'connected_gene': 'ENSG00000251878', 'score': 0.39}, {'connected_gene': 'GC04M184456', 'score': 0.39}]
chr4	GH04I184447	184447254	184452400	1.32	[{'connected_gene': 'IRF2', 'score': 12.71}, {'connected_gene': 'GC04M184456', 'score': 0.44}, {'connected_gene': 'ENSG00000251878', 'score': 0.37}]
chr4	GH04I184439	184439728	184443199	1.14	[{'connected_gene': 'IRF2', 'score': 17.92}, {'connected_gene': 'ENSG00000251878', 'score': 0.44}, {'connected_gene': 'GC04M184456', 'score': 0.37}]
chr4	GH04I184398	184398905	184403630	1.48	[{'connected_gene': 'ACSL1', 'score': 7.81}, {'connected_gene': 'IRF2', 'score': 2.27}, {'connected_gene': 'CASP3', 'score': 1.4}, {'connected_gene': 'LINC02362', 'score': 0.37}, {'connected_gene': 'GC04P184432', 'score': 0.29}]
chr4	GH04I184859	184859801	184861600	1.22	[{'connected_gene': 'ACSL1', 'score': 11.57}, {'connected_gene': 'IRF2', 'score': 2.04}, {'connected_gene': 'MIR3945HG', 'score': 0.77}, {'connected_gene': 'LINC01093', 'score': 0.28}]
chr4	GH04I184833	184833490	184833754	0.48	[{'connected_gene': 'ACSL1', 'score': 22.43}, {'connected_gene': 'IRF2', 'score': 10.81}, {'connected_gene': 'LOC105377587', 'score': 0.44}, {'connected_gene': 'MIR3945', 'score': 0.37}]
chr4	GH04I184374	184374894	184375292	0.99	[{'connected_gene': 'ACSL1', 'score': 3.58}, {'connected_gene': 'IRF2', 'score': 1.48}, {'connected_gene': 'LINC02362', 'score': 0.44}, {'connected_gene': 'LINC02363', 'score': 0.34}]
chr4	GH04I184375	184375646	184376254	0.71	[{'connected_gene': 'ACSL1', 'score': 4.49}, {'connected_gene': 'IRF2', 'score': 1.64}, {'connected_gene': 'LINC02362', 'score': 0.44}, {'connected_gene': 'LINC02363', 'score': 0.34}]
chr4	GH04I184889	184889708	184890026	0.54	[{'connected_gene': 'ACSL1', 'score': 22.84}, {'connected_gene': 'IRF2', 'score': 1.14}, {'connected_gene': 'LINC01093', 'score': 0.44}, {'connected_gene': 'MIR3945HG', 'score': 0.29}]
chr4	GH04I184848	184848310	184849653	1.22	[{'connected_gene': 'ACSL1', 'score': 13.07}, {'connected_gene': 'IRF2', 'score': 2.94}, {'connected_gene': 'MIR3945', 'score': 0.77}, {'connected_gene': 'MIR3945HG', 'score': 0.44}]
chr4	GH04I184684	184684143	184685406	1.43	[{'connected_gene': 'PRIMPOL', 'score': 28.21}, {'connected_gene': 'CASP3', 'score': 14.76}, {'connected_gene': 'CENPU', 'score': 8.73}, {'connected_gene': 'IRF2', 'score': 4.21}, {'connected_gene': 'GC04P184696', 'score': 0.39}]
chr4	GH04I184644	184644792	184651047	2.22	[{'connected_gene': 'PRIMPOL', 'score': 558.42}, {'connected_gene': 'CASP3', 'score': 550.77}, {'connected_gene': 'CENPU', 'score': 25.16}, {'connected_gene': 'ACSL1', 'score': 10.63}, {'connected_gene': 'IRF2', 'score': 10.48}, {'connected_gene': 'LINC02365', 'score': 0.34}]
chr4	GH04I184563	184563238	184564058	0.2	[{'connected_gene': 'PRIMPOL', 'score': 10.66}, {'connected_gene': 'CASP3', 'score': 10.66}, {'connected_gene': 'IRF2', 'score': 5.2}, {'connected_gene': 'LOC100129245', 'score': 0.77}, {'connected_gene': 'PIR42069', 'score': 0.23}]
chr4	GH04I184424	184424359	184434532	0.82	[{'connected_gene': 'PRIMPOL', 'score': 9.8}, {'connected_gene': 'CASP3', 'score': 9.8}, {'connected_gene': 'LINC02362', 'score': 4.97}, {'connected_gene': 'GC04P184432', 'score': 0.77}, {'connected_gene': 'ENSG00000251878', 'score': 0.77}, {'connected_gene': 'IRF2', 'score': 0.25}]
chr4	GH04I184353	184353779	184358399	1.69	[{'connected_gene': 'PRIMPOL', 'score': 19.96}, {'connected_gene': 'LINC02363', 'score': 18.35}, {'connected_gene': 'IRF2', 'score': 17.54}, {'connected_gene': 'SNX25', 'score': 11.07}, {'connected_gene': 'CDKN2AIP', 'score': 10.6}, {'connected_gene': 'ENSG00000251878', 'score': 10.55}, {'connected_gene': 'CFAP97', 'score': 10.43}, {'connected_gene': 'ACSL1', 'score': 10.38}, {'connected_gene': 'ENSG00000248206', 'score': 4.95}, {'connected_gene': 'LINC02362', 'score': 0.31}]
chr4	GH04I184338	184338990	184340296	1.56	[{'connected_gene': 'PRIMPOL', 'score': 21.73}, {'connected_gene': 'CFAP97', 'score': 14.19}, {'connected_gene': 'IRF2', 'score': 13.88}, {'connected_gene': 'TRAPPC11', 'score': 13.47}, {'connected_gene': 'RNU6-1053P', 'score': 13.18}, {'connected_gene': 'CDKN2AIP', 'score': 12.16}, {'connected_gene': 'MYL12BP2', 'score': 7.85}, {'connected_gene': 'ACSL1', 'score': 1.53}, {'connected_gene': 'LINC02363', 'score': 0.39}, {'connected_gene': 'GC04P184303', 'score': 0.28}]
chr4	GH04I184292	184292802	184294045	1.22	[{'connected_gene': 'LOC105377582', 'score': 550.77}, {'connected_gene': 'IRF2', 'score': 13.49}, {'connected_gene': 'ENSG00000251878', 'score': 11.17}, {'connected_gene': 'MYL12BP2', 'score': 11.01}, {'connected_gene': 'PRIMPOL', 'score': 10.29}, {'connected_gene': 'CASP3', 'score': 10.29}, {'connected_gene': 'RN7SL28P', 'score': 0.39}]
chr4	GH04I184437	184437401	184439000	0.51	[{'connected_gene': 'LINC02362', 'score': 5.31}, {'connected_gene': 'ENSG00000251878', 'score': 0.44}, {'connected_gene': 'GC04M184456', 'score': 0.37}, {'connected_gene': 'IRF2', 'score': 0.28}]
chr4	GH04I184397	184397826	184398389	0.2	[{'connected_gene': 'LINC02362', 'score': 0.37}, {'connected_gene': 'GC04P184432', 'score': 0.29}, {'connected_gene': 'IRF2', 'score': 0.18}]
chr4	GH04I184405	184405175	184406347	0.2	[{'connected_gene': 'LINC02362', 'score': 0.34}, {'connected_gene': 'GC04P184432', 'score': 0.31}, {'connected_gene': 'IRF2', 'score': 0.2}]
chr4	GH04I183986	183986656	183990303	1.83	[{'connected_gene': 'ENSG00000248206', 'score': 550.77}, {'connected_gene': 'IRF2', 'score': 1.93}, {'connected_gene': 'TRAPPC11', 'score': 1.46}, {'connected_gene': 'ENSG00000283355', 'score': 0.31}, {'connected_gene': 'STOX2', 'score': 0.08}]
chr4	GH04I184392	184392001	184394000	0.51	[{'connected_gene': 'ENSG00000251878', 'score': 12.52}, {'connected_gene': 'IRF2', 'score': 11.57}, {'connected_gene': 'PRIMPOL', 'score': 10.02}, {'connected_gene': 'CASP3', 'score': 10.02}, {'connected_gene': 'LINC02362', 'score': 0.39}, {'connected_gene': 'GC04P184432', 'score': 0.28}]
chr4	GH04I184394	184394477	184397290	0.96	[{'connected_gene': 'ENSG00000251878', 'score': 12.52}, {'connected_gene': 'IRF2', 'score': 11.58}, {'connected_gene': 'PRIMPOL', 'score': 10.02}, {'connected_gene': 'CASP3', 'score': 10.02}, {'connected_gene': 'LINC02362', 'score': 0.39}, {'connected_gene': 'GC04P184432', 'score': 0.28}]
chr4	GH04I184464	184464828	184465469	0.85	[{'connected_gene': 'ENSG00000251878', 'score': 11.59}, {'connected_gene': 'IRF2', 'score': 0.44}, {'connected_gene': 'ENSG00000270426', 'score': 0.44}, {'connected_gene': 'GC04M184456', 'score': 0.44}]
chr4	GH04I184453	184453007	184455104	0.97	[{'connected_gene': 'ENSG00000251878', 'score': 12.28}, {'connected_gene': 'GC04M184456', 'score': 0.77}, {'connected_gene': 'IRF2', 'score': 0.34}]
chr4	GH04I184461	184461601	184462400	0.4	[{'connected_gene': 'ENSG00000251878', 'score': 11.59}, {'connected_gene': 'GC04M184456', 'score': 0.44}, {'connected_gene': 'IRF2', 'score': 0.39}, {'connected_gene': 'ENSG00000270426', 'score': 0.39}]
chr4	GH04I184460	184460601	184461200	0.74	[{'connected_gene': 'ENSG00000251878', 'score': 11.61}, {'connected_gene': 'GC04M184456', 'score': 0.77}, {'connected_gene': 'IRF2', 'score': 0.39}, {'connected_gene': 'ENSG00000270426', 'score': 0.39}]
chr4	GH04I184468	184468449	184469068	0.2	[{'connected_gene': 'ENSG00000271646', 'score': 7.16}, {'connected_gene': 'ENSG00000270426', 'score': 0.77}, {'connected_gene': 'IRF2', 'score': 0.44}, {'connected_gene': 'GC04M184456', 'score': 0.39}]
chr4	GH04I184456	184456143	184460521	0.57	[{'connected_gene': 'GC04M184456', 'score': 550.77}, {'connected_gene': 'ENSG00000251878', 'score': 11.61}, {'connected_gene': 'PRIMPOL', 'score': 10.25}, {'connected_gene': 'CASP3', 'score': 10.25}, {'connected_gene': 'ENSG00000270426', 'score': 0.39}, {'connected_gene': 'IRF2', 'score': 0.37}]
chr4	GH04I184532	184532375	184538682	1.98	[{'connected_gene': 'GC04M184536', 'score': 550.77}, {'connected_gene': 'LINC02427', 'score': 27.19}, {'connected_gene': 'TRAPPC11', 'score': 12.94}, {'connected_gene': 'IRF2', 'score': 1.55}, {'connected_gene': 'ENSG00000271646', 'score': 0.21}]
chr4	GH04I184423	184423090	184424022	0.49	[{'connected_gene': 'GC04P184432', 'score': 0.44}, {'connected_gene': 'LINC02362', 'score': 0.26}, {'connected_gene': 'IRF2', 'score': 0.23}]
chr4	GH04I184413	184413279	184414344	1.12	[{'connected_gene': 'GC04P184432', 'score': 0.37}, {'connected_gene': 'LINC02362', 'score': 0.29}, {'connected_gene': 'IRF2', 'score': 0.21}]
chr4	GH04I184389	184389663	184390413	0.83	[{'connected_gene': 'ENSG00000251878', 'score': 11.16}, {'connected_gene': 'LINC02362', 'score': 0.44}, {'connected_gene': 'GC04P184432', 'score': 0.26}, {'connected_gene': 'IRF2', 'score': 0.18}]
chr4	GH04I184406	184406488	184410762	0.99	[{'connected_gene': 'GC04P184432', 'score': 0.34}, {'connected_gene': 'LINC02362', 'score': 0.31}, {'connected_gene': 'IRF2', 'score': 0.2}]