PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000583088	[[21279508, 21280225], [21311830, 21311952], [21318598, 21323179]]	[[21318654, 21319956]]
ENST00000331718	[[21308447, 21308639], [21311830, 21311952], [21318598, 21320482]]	[[21318654, 21319956]]
NM_021012	[[21279698, 21280225], [21311830, 21311952], [21318598, 21323179]]	[[21318654, 21319956]]

Promoter

Chrom	Start	End	Description
chr17	21279636	21279697	CAGE_peak_1_at_KCNJ12_5end,CAGE_peak_1_at_KCNJ18_5end
chr17	21279752	21279758	CAGE_peak_5_at_KCNJ12_5end,CAGE_peak_5_at_KCNJ18_5end
chr17	21279959	21279979	CAGE_peak_3_at_KCNJ12_5end,CAGE_peak_3_at_KCNJ18_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I021400	21400940	21403391	1.29	[{'connected_gene': 'RPL21P120', 'score': 18.26}, {'connected_gene': 'ENSG00000266050', 'score': 11.08}, {'connected_gene': 'ENSG00000235530', 'score': 10.06}, {'connected_gene': 'GC17M021394', 'score': 0.44}, {'connected_gene': 'GC17M021385', 'score': 0.39}, {'connected_gene': 'KCNJ12', 'score': 0.31}, {'connected_gene': 'GC17P024748', 'score': 0.28}]
chr17	GH17I021281	21281583	21290737	2.65	[{'connected_gene': 'MAP2K3', 'score': 569.75}, {'connected_gene': 'GC17P024329', 'score': 550.77}, {'connected_gene': 'KCNJ12', 'score': 14.8}, {'connected_gene': 'DHRS7B', 'score': 11.38}, {'connected_gene': 'NATD1', 'score': 4.56}]
chr17	GH17I021419	21419046	21420384	0.54	[{'connected_gene': 'MAP2K3', 'score': 10.92}, {'connected_gene': 'GC17P024738', 'score': 0.77}, {'connected_gene': 'PDLIM1P2', 'score': 0.31}, {'connected_gene': 'KCNJ12', 'score': 0.26}, {'connected_gene': 'GC17P024748', 'score': 0.22}]
chr17	GH17I021411	21411029	21411315	1.49	[{'connected_gene': 'KCNJ12', 'score': 550.29}, {'connected_gene': 'MEIS3P2', 'score': 21.33}, {'connected_gene': 'MAP2K3', 'score': 10.68}, {'connected_gene': 'GC17M021385', 'score': 0.77}, {'connected_gene': 'GC17M021394', 'score': 0.37}, {'connected_gene': 'GC17P024748', 'score': 0.25}]
chr17	GH17I021267	21267225	21269236	1.03	[{'connected_gene': 'KCNJ12', 'score': 9.72}, {'connected_gene': 'NATD1', 'score': 4.76}, {'connected_gene': 'PIR52124', 'score': 0.77}, {'connected_gene': 'EIF1P5', 'score': 0.44}]
chr17	GH17I021345	21345607	21349571	0.84	[{'connected_gene': 'KCNJ12', 'score': 12.46}, {'connected_gene': 'UPF3AP2', 'score': 10.19}, {'connected_gene': 'GC17M021334', 'score': 0.77}, {'connected_gene': 'GC17P024748', 'score': 0.37}]
chr17	GH17I021379	21379449	21379638	0.38	[{'connected_gene': 'KCNJ12', 'score': 0.77}, {'connected_gene': 'GC17P024748', 'score': 0.37}, {'connected_gene': 'GC17M021394', 'score': 0.37}]
chr17	GH17I021376	21376161	21378150	1.74	[{'connected_gene': 'KCNJ12', 'score': 558.07}, {'connected_gene': 'GC17P024748', 'score': 0.39}, {'connected_gene': 'GC17M021394', 'score': 0.37}]
chr17	GH17I021397	21397135	21398128	0.4	[{'connected_gene': 'KCNJ12', 'score': 7.62}, {'connected_gene': 'GC17M021394', 'score': 0.77}, {'connected_gene': 'GC17M021385', 'score': 0.37}, {'connected_gene': 'GC17P024748', 'score': 0.29}]
chr17	GH17I021358	21358179	21359985	0.66	[{'connected_gene': 'KCNJ12', 'score': 17.65}, {'connected_gene': 'GC17P024748', 'score': 0.77}, {'connected_gene': 'GC17M021334', 'score': 0.39}]
chr17	GH17I021369	21369870	21371542	0.92	[{'connected_gene': 'KCNJ12', 'score': 26.21}, {'connected_gene': 'GC17P024748', 'score': 0.44}]
chr17	GH17I021322	21322601	21323800	1.2	[{'connected_gene': 'UPF3AP2', 'score': 11.0}, {'connected_gene': 'MEIS3P2', 'score': 10.94}, {'connected_gene': 'KCNJ12', 'score': 10.85}, {'connected_gene': 'MAP2K3', 'score': 10.79}, {'connected_gene': 'PIR55402', 'score': 0.39}, {'connected_gene': 'GC17M021294', 'score': 0.31}]
chr17	GH17I021368	21368986	21369190	0.44	[{'connected_gene': 'KCNJ18', 'score': 2.42}, {'connected_gene': 'GC17P024748', 'score': 0.44}, {'connected_gene': 'KCNJ12', 'score': 0.44}]
chr17	GH17I021413	21411975	21412677	0.79	[{'connected_gene': 'GC17M021385', 'score': 550.77}, {'connected_gene': 'MAP2K3', 'score': 10.68}, {'connected_gene': 'GC17M021394', 'score': 0.37}, {'connected_gene': 'KCNJ12', 'score': 0.28}, {'connected_gene': 'GC17P024748', 'score': 0.25}]
chr17	GH17I021412	21411709	21411858	0.82	[{'connected_gene': 'GC17M021385', 'score': 550.77}, {'connected_gene': 'MAP2K3', 'score': 10.68}, {'connected_gene': 'GC17M021394', 'score': 0.37}, {'connected_gene': 'KCNJ12', 'score': 0.28}, {'connected_gene': 'GC17P024748', 'score': 0.25}]
chr17	GH17I021414	21413066	21413871	0.66	[{'connected_gene': 'GC17M021385', 'score': 550.77}, {'connected_gene': 'MAP2K3', 'score': 10.68}, {'connected_gene': 'GC17M021394', 'score': 0.37}, {'connected_gene': 'KCNJ12', 'score': 0.28}, {'connected_gene': 'GC17P024748', 'score': 0.23}]
chr17	GH17I021274	21274941	21276800	1.67	[{'connected_gene': 'ENSG00000235530', 'score': 11.0}, {'connected_gene': 'KCNJ12', 'score': 10.35}, {'connected_gene': 'NATD1', 'score': 5.72}, {'connected_gene': 'MAP2K3', 'score': 2.71}, {'connected_gene': 'CCDC144NL', 'score': 1.93}, {'connected_gene': 'PIR52124', 'score': 0.77}]
chr17	GH17I021389	21389509	21389658	0.2	[{'connected_gene': 'GC17M021394', 'score': 0.44}, {'connected_gene': 'KCNJ12', 'score': 0.39}, {'connected_gene': 'GC17M021385', 'score': 0.34}, {'connected_gene': 'GC17P024748', 'score': 0.31}]
chr17	GH17I021405	21405400	21405601	0.63	[{'connected_gene': 'GC17M021385', 'score': 0.44}, {'connected_gene': 'GC17M021394', 'score': 0.39}, {'connected_gene': 'KCNJ12', 'score': 0.31}, {'connected_gene': 'GC17P024748', 'score': 0.26}]