PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000417996	[[53183468, 53184142], [53184621, 53184656], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189901]]	[[53183825, 53184142], [53184621, 53184656], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189826]]
ENST00000309505	[[53183469, 53184142], [53184621, 53184659], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189892]]	[[53183825, 53184142], [53184621, 53184659], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189826]]
NM_057088	[[53183468, 53184142], [53184621, 53184656], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189892]]	[[53183825, 53184142], [53184621, 53184656], [53184989, 53185210], [53185474, 53185600], [53186022, 53186187], [53186494, 53186590], [53186946, 53187007], [53187894, 53188115], [53189181, 53189826]]

Promoter

Chrom	Start	End	Description
chr12	53189894	53189905	CAGE_peak_1_at_KRT3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I052815	52814106	52814165	0.5	[{'connected_gene': 'KRT4', 'score': 550.77}, {'connected_gene': 'KRT3', 'score': 0.44}]
chr12	GH12I052805	52805117	52805266	0.2	[{'connected_gene': 'KRT3', 'score': 550.77}, {'connected_gene': 'ENSG00000257404', 'score': 0.34}]
chr12	GH12I052796	52796107	52796166	0.5	[{'connected_gene': 'KRT3', 'score': 550.44}, {'connected_gene': 'ENSG00000257404', 'score': 0.39}]
chr12	GH12I052799	52799277	52799426	0.62	[{'connected_gene': 'KRT3', 'score': 5.28}, {'connected_gene': 'ENSG00000257404', 'score': 0.37}]
chr12	GH12I052869	52869799	52876851	1.78	[{'connected_gene': 'KRT2', 'score': 20.63}, {'connected_gene': 'PCBP2', 'score': 19.35}, {'connected_gene': 'EIF4B', 'score': 15.65}, {'connected_gene': 'AAAS', 'score': 15.53}, {'connected_gene': 'SP1', 'score': 14.86}, {'connected_gene': 'ZNF740', 'score': 14.44}, {'connected_gene': 'ATF7', 'score': 12.74}, {'connected_gene': 'KRT84', 'score': 12.12}, {'connected_gene': 'LOC100652999', 'score': 12.05}, {'connected_gene': 'PFDN5', 'score': 10.79}, {'connected_gene': 'CALCOCO1', 'score': 10.75}, {'connected_gene': 'KRT79', 'score': 10.51}, {'connected_gene': 'ENSG00000257808', 'score': 9.79}, {'connected_gene': 'KRT4', 'score': 7.83}, {'connected_gene': 'KRT8', 'score': 7.29}, {'connected_gene': 'KRT18', 'score': 6.57}, {'connected_gene': 'KRT78', 'score': 6.4}, {'connected_gene': 'KRT3', 'score': 5.12}, {'connected_gene': 'KRT6C', 'score': 3.8}, {'connected_gene': 'KRT76', 'score': 3.79}, {'connected_gene': 'KRT1', 'score': 3.04}, {'connected_gene': 'RARG', 'score': 2.73}, {'connected_gene': 'KRT6A', 'score': 1.41}, {'connected_gene': 'KRT5', 'score': 1.26}, {'connected_gene': 'RPL7P41', 'score': 0.39}]