PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000253055	[[40697650, 40698620], [40704281, 40704462], [40710391, 40710540], [40711027, 40711203], [40711817, 40712064], [40715009, 40715126], [40718711, 40718883], [40718982, 40719095], [40719423, 40720128], [40720876, 40721482]]	[[40697938, 40698620], [40704281, 40704462], [40710391, 40710540], [40711027, 40711203], [40711817, 40712064], [40715009, 40715126], [40718711, 40718883], [40718982, 40719095], [40719423, 40720128], [40720876, 40721199]]
ENST00000593906	[[40698151, 40698361], [40698544, 40698620], [40704281, 40704418], [40710391, 40710523]]	None
ENST00000594951	[[40704303, 40704462], [40711027, 40711203], [40711817, 40712064], [40715009, 40715109]]	[[40704303, 40704462], [40711027, 40711070]]
ENST00000593502	[[40704330, 40704418], [40711027, 40711203], [40715009, 40715126], [40718711, 40718883], [40718982, 40719168]]	[[40704330, 40704418], [40711027, 40711203], [40715009, 40715114]]
ENST00000597986	[[40704349, 40704462], [40710391, 40710540], [40711027, 40711203], [40715009, 40715126], [40718711, 40718883], [40718982, 40719095], [40719423, 40720128], [40720876, 40721435]]	[[40704349, 40704462], [40710391, 40710540], [40711027, 40711203], [40715009, 40715114]]
ENST00000601702	[[40710507, 40711203], [40711817, 40711908]]	None
ENST00000594569	[[40711436, 40711506], [40711817, 40712309]]	None
ENST00000594791	[[40715058, 40715126], [40718711, 40718883], [40718982, 40719641]]	None
NM_002446	[[40697650, 40698620], [40704281, 40704462], [40710391, 40710540], [40711027, 40711203], [40711817, 40712064], [40715009, 40715126], [40718711, 40718883], [40718982, 40719095], [40719423, 40720128], [40720876, 40721482]]	[[40697938, 40698620], [40704281, 40704462], [40710391, 40710540], [40711027, 40711203], [40711817, 40712064], [40715009, 40715126], [40718711, 40718883], [40718982, 40719095], [40719423, 40720128], [40720876, 40721199]]

Promoter

Chrom	Start	End	Description
chr19	40697318	40697346	CAGE_peak_1_at_MAP3K10_5end
chr19	40697348	40697366	CAGE_peak_3_at_MAP3K10_5end
chr19	40697368	40697398	CAGE_peak_2_at_MAP3K10_5end
chr19	40697514	40697528	CAGE_peak_4_at_MAP3K10_5end
chr19	40697978	40698010	CAGE_peak_6_at_MAP3K10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I040360	40360086	40361908	1.1	[{'connected_gene': 'SNRPA', 'score': 31.34}, {'connected_gene': 'ENSG00000269843', 'score': 22.16}, {'connected_gene': 'HNRNPUL1', 'score': 21.27}, {'connected_gene': 'EID2B', 'score': 13.55}, {'connected_gene': 'AXL', 'score': 13.0}, {'connected_gene': 'SPTBN4', 'score': 12.95}, {'connected_gene': 'RPS16', 'score': 10.98}, {'connected_gene': 'FBL', 'score': 10.95}, {'connected_gene': 'ITPKC', 'score': 10.93}, {'connected_gene': 'PSMC4', 'score': 10.03}, {'connected_gene': 'LTBP4', 'score': 9.71}, {'connected_gene': 'MAP3K10', 'score': 7.76}, {'connected_gene': 'HIPK4', 'score': 6.28}, {'connected_gene': 'PLD3', 'score': 4.62}, {'connected_gene': 'ENSG00000279759', 'score': 0.44}, {'connected_gene': 'MIR6796', 'score': 0.44}]
chr19	GH19I040532	40531417	40531562	0.85	[{'connected_gene': 'SPTBN4', 'score': 21.93}, {'connected_gene': 'MAP3K10', 'score': 4.93}, {'connected_gene': 'ZNF780B', 'score': 3.14}, {'connected_gene': 'TTC9B', 'score': 3.08}, {'connected_gene': 'GC19M040397', 'score': 0.34}]
chr19	GH19I040190	40190074	40192401	2.28	[{'connected_gene': 'MAP3K10', 'score': 559.26}, {'connected_gene': 'ZNF780B', 'score': 45.96}, {'connected_gene': 'NUMBL', 'score': 37.89}, {'connected_gene': 'CYP2G1P', 'score': 31.54}, {'connected_gene': 'EID2B', 'score': 28.78}, {'connected_gene': 'SUPT5H', 'score': 18.22}, {'connected_gene': 'AKT2', 'score': 15.17}, {'connected_gene': 'PAF1', 'score': 13.11}, {'connected_gene': 'TTC9B', 'score': 12.48}, {'connected_gene': 'CNTD2', 'score': 12.17}, {'connected_gene': 'ENSG00000269843', 'score': 12.14}, {'connected_gene': 'ZNF546', 'score': 12.05}, {'connected_gene': 'SNRPA', 'score': 11.84}, {'connected_gene': 'ZNF780A', 'score': 10.88}, {'connected_gene': 'RN7SL566P', 'score': 10.68}, {'connected_gene': 'PSMC4', 'score': 10.67}, {'connected_gene': 'FBL', 'score': 10.47}, {'connected_gene': 'HIPK4', 'score': 10.42}, {'connected_gene': 'ENSG00000206925', 'score': 10.1}, {'connected_gene': 'C19orf47', 'score': 10.1}, {'connected_gene': 'PLD3', 'score': 10.1}, {'connected_gene': 'FCGBP', 'score': 5.32}, {'connected_gene': 'SERTAD1', 'score': 2.17}, {'connected_gene': 'GC19M039966', 'score': 0.31}]
chr19	GH19I040358	40358002	40359203	1.02	[{'connected_gene': 'MAP3K10', 'score': 7.95}, {'connected_gene': 'ENSG00000279759', 'score': 0.77}, {'connected_gene': 'MIR6796', 'score': 0.39}, {'connected_gene': 'PLD3', 'score': 0.39}]
chr19	GH19I040277	40277358	40287796	2.51	[{'connected_gene': 'AKT2', 'score': 572.34}, {'connected_gene': 'MIR641', 'score': 550.77}, {'connected_gene': 'ZNF780B', 'score': 54.73}, {'connected_gene': 'SUPT5H', 'score': 23.18}, {'connected_gene': 'COQ8B', 'score': 22.62}, {'connected_gene': 'SNRPA', 'score': 22.06}, {'connected_gene': 'NUMBL', 'score': 21.47}, {'connected_gene': 'ZNF780A', 'score': 20.58}, {'connected_gene': 'ENSG00000269843', 'score': 20.15}, {'connected_gene': 'MAP3K10', 'score': 19.98}, {'connected_gene': 'CYP2G1P', 'score': 15.86}, {'connected_gene': 'PRX', 'score': 12.5}, {'connected_gene': 'HNRNPUL1', 'score': 12.1}, {'connected_gene': 'PAF1', 'score': 11.99}, {'connected_gene': 'C19orf47', 'score': 10.99}, {'connected_gene': 'RN7SL566P', 'score': 10.51}, {'connected_gene': 'ZNF546', 'score': 10.39}, {'connected_gene': 'PSMC4', 'score': 10.03}, {'connected_gene': 'PLD3', 'score': 5.73}, {'connected_gene': 'GC19P040291', 'score': 0.77}, {'connected_gene': 'ENSG00000205041', 'score': 0.44}]
chr19	GH19I040265	40265815	40266670	1.16	[{'connected_gene': 'AKT2', 'score': 550.37}, {'connected_gene': 'ZNF780B', 'score': 28.78}, {'connected_gene': 'SUPT5H', 'score': 11.96}, {'connected_gene': 'NUMBL', 'score': 11.94}, {'connected_gene': 'ZNF780A', 'score': 10.72}, {'connected_gene': 'ZNF546', 'score': 10.35}, {'connected_gene': 'MAP3K10', 'score': 9.69}, {'connected_gene': 'ENSG00000205041', 'score': 0.44}, {'connected_gene': 'PIR38327', 'score': 0.29}]
chr19	GH19I040165	40165414	40165563	0.68	[{'connected_gene': 'TTC9B', 'score': 11.85}, {'connected_gene': 'CNTD2', 'score': 11.55}, {'connected_gene': 'GC19M039966', 'score': 0.77}, {'connected_gene': 'MAP3K10', 'score': 0.31}]
chr19	GH19I040164	40164374	40164472	0.31	[{'connected_gene': 'TTC9B', 'score': 11.85}, {'connected_gene': 'CNTD2', 'score': 11.55}, {'connected_gene': 'GC19M039966', 'score': 0.77}, {'connected_gene': 'MAP3K10', 'score': 0.31}]
chr19	GH19I040166	40165674	40165843	0.7	[{'connected_gene': 'TTC9B', 'score': 11.85}, {'connected_gene': 'CNTD2', 'score': 11.55}, {'connected_gene': 'ZNF780A', 'score': 11.34}, {'connected_gene': 'GC19M039966', 'score': 0.77}, {'connected_gene': 'MAP3K10', 'score': 0.31}]
chr19	GH19I040219	40219314	40220828	1.41	[{'connected_gene': 'TTC9B', 'score': 550.77}, {'connected_gene': 'ENSG00000269843', 'score': 62.93}, {'connected_gene': 'SNRPA', 'score': 57.57}, {'connected_gene': 'FBL', 'score': 23.3}, {'connected_gene': 'ITPKC', 'score': 19.09}, {'connected_gene': 'RPS16', 'score': 18.96}, {'connected_gene': 'ZNF780A', 'score': 18.68}, {'connected_gene': 'ZNF780B', 'score': 18.29}, {'connected_gene': 'PLEKHG2', 'score': 12.88}, {'connected_gene': 'AKT2', 'score': 12.2}, {'connected_gene': 'MAP3K10', 'score': 12.06}, {'connected_gene': 'RN7SL566P', 'score': 11.36}, {'connected_gene': 'ENSG00000268366', 'score': 10.83}, {'connected_gene': 'SERTAD3', 'score': 10.3}, {'connected_gene': 'PSMC4', 'score': 10.04}, {'connected_gene': 'COQ8B', 'score': 9.91}, {'connected_gene': 'PLD3', 'score': 9.86}, {'connected_gene': 'HIPK4', 'score': 4.8}, {'connected_gene': 'CNTD2', 'score': 0.44}]
chr19	GH19I040508	40508934	40509107	0.64	[{'connected_gene': 'TTC9B', 'score': 4.79}, {'connected_gene': 'SPTBN4', 'score': 3.97}, {'connected_gene': 'MAP3K10', 'score': 2.36}, {'connected_gene': 'GC19M040397', 'score': 0.26}]
chr19	GH19I040244	40244154	40250754	0.69	[{'connected_gene': 'EID2B', 'score': 17.21}, {'connected_gene': 'MED29', 'score': 15.3}, {'connected_gene': 'SPTBN4', 'score': 14.01}, {'connected_gene': 'PLD3', 'score': 10.57}, {'connected_gene': 'CYP2G1P', 'score': 10.13}, {'connected_gene': 'EID2', 'score': 10.08}, {'connected_gene': 'MAP3K10', 'score': 9.16}, {'connected_gene': 'C19orf47', 'score': 6.76}, {'connected_gene': 'ITPKC', 'score': 4.41}, {'connected_gene': 'PIR38327', 'score': 0.39}, {'connected_gene': 'ENSG00000205041', 'score': 0.31}, {'connected_gene': 'AKT2', 'score': 0.28}]
chr19	GH19I040273	40273168	40275552	1.3	[{'connected_gene': 'ENSG00000205041', 'score': 550.77}, {'connected_gene': 'MAP3K10', 'score': 20.64}, {'connected_gene': 'C19orf47', 'score': 8.86}, {'connected_gene': 'PLD3', 'score': 8.52}, {'connected_gene': 'SERTAD3', 'score': 4.95}, {'connected_gene': 'AKT2', 'score': 0.39}, {'connected_gene': 'PIR38327', 'score': 0.28}]
chr19	GH19I040209	40209214	40209363	0.84	[{'connected_gene': 'GC19P040210', 'score': 550.77}, {'connected_gene': 'MAP3K10', 'score': 0.37}]
chr19	GH19I040162	40162619	40164029	0.64	[{'connected_gene': 'GC19M039966', 'score': 550.77}, {'connected_gene': 'TTC9B', 'score': 11.84}, {'connected_gene': 'CNTD2', 'score': 11.55}, {'connected_gene': 'FCGBP', 'score': 9.81}, {'connected_gene': 'ZNF780A', 'score': 9.6}, {'connected_gene': 'MAP3K10', 'score': 5.36}]