PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000341376	[[41040683, 41040823], [41046767, 41046903], [41048549, 41048636], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41067715]]	[[41046828, 41046903], [41048549, 41048636], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41065149]]
ENST00000353205	[[41040721, 41040823], [41046767, 41046903], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41065689]]	[[41046828, 41046903], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41065149]]
NM_021705	[[41040706, 41040823], [41046767, 41046903], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41070146]]	[[41046828, 41046903], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41065149]]
NM_002505	[[41040706, 41040823], [41046767, 41046903], [41048549, 41048636], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41070146]]	[[41046828, 41046903], [41048549, 41048636], [41051784, 41051931], [41057317, 41057449], [41057942, 41058048], [41059266, 41059433], [41060650, 41060824], [41062134, 41062236], [41065095, 41065149]]

Promoter

Chrom	Start	End	Description
chr6	41040678	41040722	CAGE_peak_1_at_NFYA_5end
chr6	41040849	41040860	CAGE_peak_3_at_NFYA_5end
chr6	41040905	41040916	CAGE_peak_4_at_NFYA_5end
chr6	41040923	41040952	CAGE_peak_2_at_NFYA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I041455	41455218	41457840	1.21	[{'connected_gene': 'MED20', 'score': 18.45}, {'connected_gene': 'TAF8', 'score': 12.06}, {'connected_gene': 'OARD1', 'score': 12.02}, {'connected_gene': 'FOXP4', 'score': 10.92}, {'connected_gene': 'FOXP4-AS1', 'score': 10.91}, {'connected_gene': 'NFYA', 'score': 9.79}, {'connected_gene': 'ENSG00000124593', 'score': 9.72}, {'connected_gene': 'GC06M041477', 'score': 0.34}, {'connected_gene': 'ENSG00000280371', 'score': 0.23}]
chr6	GH06I041198	41198315	41204545	1.82	[{'connected_gene': 'TREML2', 'score': 550.77}, {'connected_gene': 'TREML4', 'score': 42.38}, {'connected_gene': 'TREML3P', 'score': 20.13}, {'connected_gene': 'TREM2', 'score': 11.58}, {'connected_gene': 'USP49', 'score': 11.29}, {'connected_gene': 'ADCY10P1', 'score': 10.9}, {'connected_gene': 'NFYA', 'score': 10.5}, {'connected_gene': 'TREML5P', 'score': 8.17}, {'connected_gene': 'TREML1', 'score': 5.43}, {'connected_gene': 'ENSG00000218809', 'score': 5.04}]
chr6	GH06I040587	40587162	40588111	1.95	[{'connected_gene': 'LRFN2', 'score': 550.77}, {'connected_gene': 'NFYA', 'score': 10.42}, {'connected_gene': 'GC06P042419', 'score': 0.17}]
chr6	GH06I041284	41284001	41287803	1.77	[{'connected_gene': 'TREM1', 'score': 559.9}, {'connected_gene': 'TFEB', 'score': 4.85}, {'connected_gene': 'NFYA', 'score': 4.81}, {'connected_gene': 'TREML2', 'score': 3.2}, {'connected_gene': 'TREML4', 'score': 1.59}, {'connected_gene': 'GC06M041280', 'score': 0.77}]
chr6	GH06I041242	41242571	41242622	0.33	[{'connected_gene': 'TREM1', 'score': 7.68}, {'connected_gene': 'NFYA', 'score': 5.24}, {'connected_gene': 'TFEB', 'score': 4.73}, {'connected_gene': 'TREML2', 'score': 4.07}, {'connected_gene': 'TREML5P', 'score': 0.77}, {'connected_gene': 'RNA5SP207', 'score': 0.77}]
chr6	GH06I041278	41278799	41279600	1.64	[{'connected_gene': 'TREM1', 'score': 17.99}, {'connected_gene': 'USP49', 'score': 11.29}, {'connected_gene': 'NFYA', 'score': 7.56}, {'connected_gene': 'TFEB', 'score': 6.88}, {'connected_gene': 'TREML2', 'score': 4.62}, {'connected_gene': 'TREML4', 'score': 1.94}, {'connected_gene': 'GC06M041280', 'score': 0.77}, {'connected_gene': 'ENSG00000218809', 'score': 0.44}]
chr6	GH06I041181	41181802	41183462	1.34	[{'connected_gene': 'TREM1', 'score': 40.57}, {'connected_gene': 'ADCY10P1', 'score': 11.25}, {'connected_gene': 'TREML1', 'score': 10.86}, {'connected_gene': 'TREML4', 'score': 9.26}, {'connected_gene': 'NFYA', 'score': 8.48}, {'connected_gene': 'TREML2', 'score': 4.7}, {'connected_gene': 'TREM2', 'score': 0.37}]
chr6	GH06I041185	41185201	41186796	1.03	[{'connected_gene': 'TREM1', 'score': 24.84}, {'connected_gene': 'ADCY10P1', 'score': 11.29}, {'connected_gene': 'TREML1', 'score': 10.84}, {'connected_gene': 'TREML4', 'score': 5.72}, {'connected_gene': 'NFYA', 'score': 2.17}, {'connected_gene': 'TREML2', 'score': 0.37}, {'connected_gene': 'TREM2', 'score': 0.34}]
chr6	GH06I041318	41318601	41321217	1.69	[{'connected_gene': 'TREM1', 'score': 8.74}, {'connected_gene': 'ADCY10P1', 'score': 6.68}, {'connected_gene': 'TREML4', 'score': 2.45}, {'connected_gene': 'NFYA', 'score': 1.77}, {'connected_gene': 'TFEB', 'score': 1.18}, {'connected_gene': 'RPL32P15', 'score': 0.44}, {'connected_gene': 'NCR2', 'score': 0.37}]
chr6	GH06I041070	41070635	41076532	2.32	[{'connected_gene': 'NFYA', 'score': 550.77}, {'connected_gene': 'OARD1', 'score': 550.34}, {'connected_gene': 'ADCY10P1', 'score': 37.47}, {'connected_gene': 'TAF8', 'score': 19.81}, {'connected_gene': 'FRS3', 'score': 11.21}, {'connected_gene': 'TSPO2', 'score': 10.65}, {'connected_gene': 'UNC5CL', 'score': 10.65}, {'connected_gene': 'APOBEC2', 'score': 7.7}]
chr6	GH06I040719	40719204	40721119	0.95	[{'connected_gene': 'NFYA', 'score': 4.38}, {'connected_gene': 'LOC105375052', 'score': 0.77}, {'connected_gene': 'LOC105375053', 'score': 0.14}]
chr6	GH06I041487	41487925	41489910	1.24	[{'connected_gene': 'NFYA', 'score': 10.42}, {'connected_gene': 'LINC01276', 'score': 0.39}, {'connected_gene': 'GC06M041477', 'score': 0.39}]
chr6	GH06I040995	40995297	41000613	1.2	[{'connected_gene': 'TSPO2', 'score': 11.87}, {'connected_gene': 'UNC5CL', 'score': 11.87}, {'connected_gene': 'NFYA', 'score': 4.95}, {'connected_gene': 'LOC101929555', 'score': 0.31}, {'connected_gene': 'GC06P042401', 'score': 0.17}]
chr6	GH06I041079	41079832	41080348	0.31	[{'connected_gene': 'TSPO2', 'score': 10.18}, {'connected_gene': 'UNC5CL', 'score': 10.16}, {'connected_gene': 'TREML1', 'score': 9.63}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.37}]
chr6	GH06I041080	41080801	41081000	0.4	[{'connected_gene': 'TSPO2', 'score': 10.18}, {'connected_gene': 'UNC5CL', 'score': 10.16}, {'connected_gene': 'TREML1', 'score': 9.63}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.37}]
chr6	GH06I041066	41066922	41067131	0.95	[{'connected_gene': 'TSPO2', 'score': 11.6}, {'connected_gene': 'UNC5CL', 'score': 11.6}, {'connected_gene': 'APOBEC2', 'score': 7.76}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.29}]
chr6	GH06I041097	41097233	41098626	0.38	[{'connected_gene': 'OARD1', 'score': 550.77}, {'connected_gene': 'GC06P042014', 'score': 0.77}, {'connected_gene': 'PIR45100', 'score': 0.77}, {'connected_gene': 'NFYA', 'score': 0.34}]
chr6	GH06I041100	41100493	41101531	0.54	[{'connected_gene': 'ADCY10P1', 'score': 593.4}, {'connected_gene': 'GC06P042014', 'score': 550.77}, {'connected_gene': 'PIR45100', 'score': 550.77}, {'connected_gene': 'TREM1', 'score': 5.15}, {'connected_gene': 'NFYA', 'score': 0.31}]
chr6	GH06I041062	41062355	41066782	1.32	[{'connected_gene': 'ADCY10P1', 'score': 36.39}, {'connected_gene': 'APOBEC2', 'score': 13.61}, {'connected_gene': 'TSPO2', 'score': 12.25}, {'connected_gene': 'UNC5CL', 'score': 12.22}, {'connected_gene': 'NFYA', 'score': 0.44}, {'connected_gene': 'OARD1', 'score': 0.29}]
chr6	GH06I041247	41247106	41247452	0.22	[{'connected_gene': 'TREML5P', 'score': 550.77}, {'connected_gene': 'TREM1', 'score': 8.28}, {'connected_gene': 'NFYA', 'score': 5.23}, {'connected_gene': 'TFEB', 'score': 4.99}, {'connected_gene': 'TREML2', 'score': 3.82}, {'connected_gene': 'RNA5SP207', 'score': 0.44}]
chr6	GH06I041536	41536233	41539272	1.6	[{'connected_gene': 'TAF8', 'score': 13.17}, {'connected_gene': 'TREM1', 'score': 3.82}, {'connected_gene': 'TREML4', 'score': 2.06}, {'connected_gene': 'TFEB', 'score': 1.4}, {'connected_gene': 'NFYA', 'score': 1.18}, {'connected_gene': 'FOXP4', 'score': 0.44}, {'connected_gene': 'FOXP4-AS1', 'score': 0.39}, {'connected_gene': 'LINC01276', 'score': 0.28}]
chr6	GH06I041560	41560171	41563301	1.38	[{'connected_gene': 'FOXP4', 'score': 11.79}, {'connected_gene': 'MDFI', 'score': 10.53}, {'connected_gene': 'CCND3', 'score': 5.38}, {'connected_gene': 'NFYA', 'score': 1.47}, {'connected_gene': 'TAF8', 'score': 1.46}, {'connected_gene': 'TFEB', 'score': 1.16}, {'connected_gene': 'GC06P041980', 'score': 0.39}, {'connected_gene': 'GC06P041785', 'score': 0.39}, {'connected_gene': 'GC06M041544', 'score': 0.31}]
chr6	GH06I041051	41051558	41060052	1.78	[{'connected_gene': 'APOBEC2', 'score': 560.66}, {'connected_gene': 'ADCY10P1', 'score': 38.36}, {'connected_gene': 'TREML3P', 'score': 5.61}, {'connected_gene': 'NFYA', 'score': 0.37}, {'connected_gene': 'OARD1', 'score': 0.26}]
chr6	GH06I041269	41269171	41269524	0.45	[{'connected_gene': 'ENSG00000218809', 'score': 550.77}, {'connected_gene': 'TREM1', 'score': 9.68}, {'connected_gene': 'NFYA', 'score': 3.71}, {'connected_gene': 'TREML4', 'score': 2.36}, {'connected_gene': 'TREML2', 'score': 2.05}, {'connected_gene': 'TFEB', 'score': 2.02}, {'connected_gene': 'ENSG00000278745', 'score': 0.37}]
chr6	GH06I041271	41271001	41273316	1.27	[{'connected_gene': 'ENSG00000218809', 'score': 550.77}, {'connected_gene': 'TREM1', 'score': 41.56}, {'connected_gene': 'TREML4', 'score': 25.99}, {'connected_gene': 'NFYA', 'score': 9.7}, {'connected_gene': 'TREML3P', 'score': 9.27}, {'connected_gene': 'TFEB', 'score': 6.27}, {'connected_gene': 'TREML2', 'score': 6.09}, {'connected_gene': 'TREML1', 'score': 1.38}, {'connected_gene': 'GC06M041280', 'score': 0.44}]