PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000543885	[[43914186, 43914298], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44040322]]	[[44027616, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44036599]]
ENST00000269439	[[43914186, 43914298], [44013152, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44043103]]	[[43914237, 43914298], [44013152, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44036599]]
ENST00000586604	[[43914186, 43914298], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44043103]]	[[43914237, 43914298], [44027525, 44027551]]
ENST00000593230	[[43906771, 43906910], [44013152, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030312]]	[[44013292, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030312]]
ENST00000587853	[[43913930, 43914075], [43914192, 43914298], [43915850, 43917610]]	[[43914237, 43914298], [43915850, 43915858]]
ENST00000590330	[[43913990, 43914298], [43915850, 43916591]]	[[43914237, 43914298], [43915850, 43915858]]
ENST00000588679	[[43914186, 43917090]]	[[43914237, 43914444]]
ENST00000592777	[[44027409, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036030]]	None
NM_001256758	[[43914186, 43914298], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44040783]]	[[44027616, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44036599]]
NM_152470	[[43914186, 43914298], [44013152, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44040783]]	[[43914237, 43914298], [44013152, 44013468], [44015251, 44015359], [44027525, 44027655], [44030258, 44030363], [44030666, 44030762], [44035936, 44036043], [44036481, 44036599]]
NR_046357	[[43914186, 43914298], [43915850, 43917614]]	None

Promoter

Chrom	Start	End	Description
chr18	43913905	43913914	CAGE_peak_6_at_RNF165_5end
chr18	43913919	43913967	CAGE_peak_2_at_RNF165_5end
chr18	43913973	43914005	CAGE_peak_1_at_RNF165_5end
chr18	43914019	43914036	CAGE_peak_4_at_RNF165_5end
chr18	43914051	43914066	CAGE_peak_5_at_RNF165_5end
chr18	43914159	43914222	CAGE_peak_3_at_RNF165_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I046792	46792175	46792443	0.26	[{'connected_gene': 'PIAS2', 'score': 12.55}, {'connected_gene': 'RNF165', 'score': 1.87}, {'connected_gene': 'ENSG00000274776', 'score': 0.77}, {'connected_gene': 'GC18P046803', 'score': 0.39}]
chr18	GH18I045997	45997340	45999650	1.36	[{'connected_gene': 'EPG5', 'score': 7.38}, {'connected_gene': 'HAUS1', 'score': 5.19}, {'connected_gene': 'SLC14A2', 'score': 4.4}, {'connected_gene': 'RNF165', 'score': 1.55}, {'connected_gene': 'RN7SKP26', 'score': 0.44}, {'connected_gene': 'LOC100422497', 'score': 0.31}, {'connected_gene': 'PSTPIP2', 'score': 0.19}]
chr18	GH18I046259	46259381	46265998	0.89	[{'connected_gene': 'RNF165', 'score': 11.24}, {'connected_gene': 'ATP5F1A', 'score': 6.51}, {'connected_gene': 'C18orf25', 'score': 6.24}, {'connected_gene': 'GC18P046277', 'score': 0.39}]
chr18	GH18I046600	46600258	46601885	0.42	[{'connected_gene': 'RNF165', 'score': 4.54}, {'connected_gene': 'LOXHD1', 'score': 3.09}, {'connected_gene': 'GC18M046613', 'score': 0.39}, {'connected_gene': 'GC18P046580', 'score': 0.34}]
chr18	GH18I046425	46425058	46425423	0.49	[{'connected_gene': 'RNF165', 'score': 13.44}, {'connected_gene': 'GC18P046450', 'score': 0.31}, {'connected_gene': 'LOC105372095', 'score': 0.28}]
chr18	GH18I046414	46414401	46415244	0.74	[{'connected_gene': 'RNF165', 'score': 17.93}, {'connected_gene': 'LOC105372095', 'score': 0.31}, {'connected_gene': 'GC18P046450', 'score': 0.28}]
chr18	GH18I046410	46410035	46414259	1.04	[{'connected_gene': 'RNF165', 'score': 12.64}, {'connected_gene': 'LOC105372095', 'score': 0.34}, {'connected_gene': 'GC18P046450', 'score': 0.28}]
chr18	GH18I046418	46418887	46420131	0.86	[{'connected_gene': 'RNF165', 'score': 17.22}, {'connected_gene': 'LOC105372095', 'score': 0.31}, {'connected_gene': 'GC18P046450', 'score': 0.29}]
chr18	GH18I046333	46333800	46339304	2.25	[{'connected_gene': 'RNF165', 'score': 550.44}, {'connected_gene': 'GC18P046376', 'score': 0.26}]
chr18	GH18I046343	46343658	46344944	0.9	[{'connected_gene': 'RNF165', 'score': 0.37}, {'connected_gene': 'GC18P046376', 'score': 0.29}]
chr18	GH18I046334	46333058	46333792	1.02	[{'connected_gene': 'RNF165', 'score': 0.44}, {'connected_gene': 'GC18P046376', 'score': 0.26}]
chr18	GH18I046151	46151884	46154131	1.42	[{'connected_gene': 'C18orf25', 'score': 6.06}, {'connected_gene': 'PSTPIP2', 'score': 5.15}, {'connected_gene': 'RNF165', 'score': 3.52}, {'connected_gene': 'GC18M046141', 'score': 0.37}, {'connected_gene': 'GC18M046122', 'score': 0.29}, {'connected_gene': 'RNU6-1278P', 'score': 0.29}]
chr18	GH18I046385	46385794	46390245	0.43	[{'connected_gene': 'LOC105372095', 'score': 550.77}, {'connected_gene': 'RNF165', 'score': 8.5}, {'connected_gene': 'ENSG00000279829', 'score': 0.77}]
chr18	GH18I046407	46407401	46407801	0.66	[{'connected_gene': 'LOC105372095', 'score': 0.37}, {'connected_gene': 'GC18P046450', 'score': 0.26}, {'connected_gene': 'RNF165', 'score': 0.18}]
chr18	GH18I046408	46408319	46408947	0.86	[{'connected_gene': 'LOC105372095', 'score': 0.37}, {'connected_gene': 'GC18P046450', 'score': 0.26}, {'connected_gene': 'RNF165', 'score': 0.18}]
chr18	GH18I046790	46790260	46790600	0.24	[{'connected_gene': 'ENSG00000274776', 'score': 550.77}, {'connected_gene': 'KATNAL2', 'score': 14.07}, {'connected_gene': 'PIAS2', 'score': 13.45}, {'connected_gene': 'RNF165', 'score': 1.36}, {'connected_gene': 'GC18P046803', 'score': 0.39}]
chr18	GH18I046458	46458558	46458707	0.38	[{'connected_gene': 'GC18P046450', 'score': 0.44}, {'connected_gene': 'GC18P046558', 'score': 0.15}, {'connected_gene': 'RNF165', 'score': 0.12}]
chr18	GH18I046366	46366251	46367353	0.2	[{'connected_gene': 'GC18P046376', 'score': 0.39}, {'connected_gene': 'RNF165', 'score': 0.28}]
chr18	GH18I046323	46323904	46325347	1.18	[{'connected_gene': 'GC18M046275', 'score': 550.77}, {'connected_gene': 'RNF165', 'score': 5.03}, {'connected_gene': 'GC18P046309', 'score': 0.37}]
chr18	GH18I046426	46426158	46426307	0.2	[{'connected_gene': 'GC18P046450', 'score': 0.34}, {'connected_gene': 'LOC105372095', 'score': 0.28}, {'connected_gene': 'RNF165', 'score': 0.15}]
chr18	GH18I046424	46424734	46424774	0.2	[{'connected_gene': 'GC18P046450', 'score': 0.31}, {'connected_gene': 'LOC105372095', 'score': 0.28}, {'connected_gene': 'RNF165', 'score': 0.15}]
chr18	GH18I046448	46448538	46448707	0.2	[{'connected_gene': 'GC18P046450', 'score': 0.77}, {'connected_gene': 'LOC105372095', 'score': 0.22}, {'connected_gene': 'RNF165', 'score': 0.13}]
chr18	GH18I046433	46433001	46434148	0.63	[{'connected_gene': 'GC18P046450', 'score': 0.37}, {'connected_gene': 'LOC105372095', 'score': 0.26}, {'connected_gene': 'RNF165', 'score': 0.14}]