PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000391927	[[207217193, 207223068], [207224032, 207224192], [207225529, 207225580]]	[[207222364, 207223068], [207224032, 207224192], [207225529, 207225580]]
ENST00000367084	[[207217193, 207223068], [207224032, 207224192], [207225529, 207225668], [207226208, 207226325]]	[[207222364, 207223068], [207224032, 207224192], [207225529, 207225580]]
ENST00000315927	[[207217193, 207223068], [207224032, 207224422]]	[[207222364, 207223068], [207224032, 207224375]]
NM_001276320	[[207217193, 207223068], [207224032, 207224192], [207225529, 207225668], [207226208, 207226325]]	[[207222364, 207223068], [207224032, 207224192], [207225529, 207225580]]
NM_018566	[[207217193, 207223068], [207224032, 207224422]]	[[207222364, 207223068], [207224032, 207224375]]

Promoter

Chrom	Start	End	Description
chr1	207224307	207224368	CAGE_peak_1_at_YOD1_5end
chr1	207224547	207224559	CAGE_peak_2_at_YOD1_5end
chr1	207226313	207226335	CAGE_peak_4_at_YOD1_5end
chr1	207226437	207226466	CAGE_peak_3_at_YOD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I207066	207066279	207068660	0.58	[{'connected_gene': 'C1orf116', 'score': 10.44}, {'connected_gene': 'FCAMR', 'score': 10.36}, {'connected_gene': 'PIGR', 'score': 10.33}, {'connected_gene': 'IL20', 'score': 9.84}, {'connected_gene': 'PFKFB2', 'score': 8.28}, {'connected_gene': 'YOD1', 'score': 0.39}, {'connected_gene': 'C4BPB', 'score': 0.34}]
chr1	GH01I207064	207064091	207065188	0.4	[{'connected_gene': 'C1orf116', 'score': 10.44}, {'connected_gene': 'FCAMR', 'score': 10.37}, {'connected_gene': 'PIGR', 'score': 10.33}, {'connected_gene': 'IL20', 'score': 9.84}, {'connected_gene': 'PFKFB2', 'score': 4.93}, {'connected_gene': 'YOD1', 'score': 0.39}, {'connected_gene': 'C4BPB', 'score': 0.34}]
chr1	GH01I207059	207059401	207060200	0.31	[{'connected_gene': 'YOD1', 'score': 0.44}, {'connected_gene': 'PFKFB2', 'score': 0.31}, {'connected_gene': 'C4BPB', 'score': 0.31}]
chr1	GH01I207047	207047601	207047800	0.72	[{'connected_gene': 'YOD1', 'score': 0.44}, {'connected_gene': 'PFKFB2', 'score': 0.39}]
chr1	GH01I207070	207070401	207072137	0.4	[{'connected_gene': 'PFKFB2', 'score': 27.06}, {'connected_gene': 'C1orf116', 'score': 10.88}, {'connected_gene': 'FCAMR', 'score': 10.35}, {'connected_gene': 'PIGR', 'score': 10.33}, {'connected_gene': 'C4BPA', 'score': 10.23}, {'connected_gene': 'IL20', 'score': 9.83}, {'connected_gene': 'YOD1', 'score': 0.37}, {'connected_gene': 'C4BPB', 'score': 0.37}]
chr1	GH01I207073	207073318	207074949	0.38	[{'connected_gene': 'PFKFB2', 'score': 27.99}, {'connected_gene': 'YOD1', 'score': 12.78}, {'connected_gene': 'C1orf116', 'score': 10.66}, {'connected_gene': 'C4BPB', 'score': 0.39}]
chr1	GH01I207048	207048086	207057800	2.51	[{'connected_gene': 'PFKFB2', 'score': 559.05}, {'connected_gene': 'YOD1', 'score': 550.77}, {'connected_gene': 'EIF2D', 'score': 22.36}, {'connected_gene': 'CDCA4P4', 'score': 20.35}, {'connected_gene': 'MAPKAPK2', 'score': 14.81}, {'connected_gene': 'C1orf116', 'score': 10.96}, {'connected_gene': 'CR1', 'score': 10.55}, {'connected_gene': 'CD46', 'score': 9.92}]
chr1	GH01I207039	207039658	207041007	0.8	[{'connected_gene': 'PFKFB2', 'score': 0.44}, {'connected_gene': 'YOD1', 'score': 0.39}]
chr1	GH01I207046	207046601	207047200	0.58	[{'connected_gene': 'PFKFB2', 'score': 8.74}, {'connected_gene': 'YOD1', 'score': 0.44}]
chr1	GH01I207036	207036013	207036399	0.46	[{'connected_gene': 'PFKFB2', 'score': 550.77}, {'connected_gene': 'YOD1', 'score': 0.37}]
chr1	GH01I207077	207077800	207078201	1.27	[{'connected_gene': 'PFKFB2', 'score': 25.82}, {'connected_gene': 'CR1', 'score': 10.7}, {'connected_gene': 'C4BPA', 'score': 10.58}, {'connected_gene': 'FCAMR', 'score': 10.38}, {'connected_gene': 'PIGR', 'score': 10.36}, {'connected_gene': 'C4BPB', 'score': 0.39}, {'connected_gene': 'YOD1', 'score': 0.34}]
chr1	GH01I207084	207084296	207085445	1.33	[{'connected_gene': 'CR1', 'score': 11.31}, {'connected_gene': 'PFKFB2', 'score': 10.55}, {'connected_gene': 'C4BPB', 'score': 0.77}, {'connected_gene': 'YOD1', 'score': 0.29}]
chr1	GH01I207407	207407601	207408309	1.03	[{'connected_gene': 'CR1', 'score': 20.68}, {'connected_gene': 'CD55', 'score': 13.79}, {'connected_gene': 'CR2', 'score': 11.75}, {'connected_gene': 'C4BPB', 'score': 11.39}, {'connected_gene': 'C4BPA', 'score': 10.0}, {'connected_gene': 'CD46', 'score': 3.49}, {'connected_gene': 'YOD1', 'score': 1.63}, {'connected_gene': 'ENSG00000283044', 'score': 0.44}, {'connected_gene': 'ENSG00000274245', 'score': 0.28}]