PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295797	[[169940152, 169940558], [169953017, 169953139], [169977756, 169977846], [169981166, 169981217], [169985702, 169985788], [169988208, 169988349], [169991073, 169991128], [169993016, 169993075], [169998014, 169998191], [169998953, 169999051], [169999669, 169999756], [170002248, 170002384], [170009641, 170009729], [170011170, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170023769]]	[[169940457, 169940558], [169953017, 169953139], [169977756, 169977846], [169981166, 169981217], [169985702, 169985788], [169988208, 169988349], [169991073, 169991128], [169993016, 169993075], [169998014, 169998191], [169998953, 169999051], [169999669, 169999756], [170002248, 170002384], [170009641, 170009729], [170011170, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170020915]]
ENST00000482353	[[169999397, 169999756], [170002248, 170002384]]	None
ENST00000488541	[[169997932, 169998191], [169998953, 169999026]]	None
ENST00000493761	[[169998027, 169998191], [169998953, 169999325]]	None
ENST00000476635	[[170009429, 170009729], [170011170, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170023765]]	None
ENST00000485837	[[170011119, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170020953]]	None
ENST00000483697	[[170011134, 170011296], [170013698, 170013778], [170015091, 170015116]]	None
NM_002740	[[169940219, 169940558], [169953017, 169953139], [169977756, 169977846], [169981166, 169981217], [169985702, 169985788], [169988208, 169988349], [169991073, 169991128], [169993016, 169993075], [169998014, 169998191], [169998953, 169999051], [169999669, 169999756], [170002248, 170002384], [170009641, 170009729], [170011170, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170023770]]	[[169940457, 169940558], [169953017, 169953139], [169977756, 169977846], [169981166, 169981217], [169985702, 169985788], [169988208, 169988349], [169991073, 169991128], [169993016, 169993075], [169998014, 169998191], [169998953, 169999051], [169999669, 169999756], [170002248, 170002384], [170009641, 170009729], [170011170, 170011296], [170013698, 170013778], [170015091, 170015181], [170016782, 170016898], [170020827, 170020915]]

Promoter

Chrom	Start	End	Description
chr3	169940162	169940183	CAGE_peak_4_at_PRKCI_5end
chr3	169940188	169940198	CAGE_peak_5_at_PRKCI_5end
chr3	169940200	169940235	CAGE_peak_2_at_PRKCI_5end
chr3	169940237	169940259	CAGE_peak_3_at_PRKCI_5end
chr3	169940261	169940327	CAGE_peak_1_at_PRKCI_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I170189	170189112	170189600	0.94	[{'connected_gene': 'PHC3', 'score': 0.44}, {'connected_gene': 'PRKCI', 'score': 0.29}]
chr3	GH03I170907	170907391	170910241	2.31	[{'connected_gene': 'EIF5A2', 'score': 555.74}, {'connected_gene': 'PHC3', 'score': 29.19}, {'connected_gene': 'SEC62-AS1', 'score': 22.35}, {'connected_gene': 'RPL22L1', 'score': 18.29}, {'connected_gene': 'PRKCI', 'score': 10.42}, {'connected_gene': 'GC03M170953', 'score': 0.25}]
chr3	GH03I170698	170698852	170700011	1.08	[{'connected_gene': 'MYNN', 'score': 18.73}, {'connected_gene': 'PHC3', 'score': 14.02}, {'connected_gene': 'SEC62-AS1', 'score': 12.07}, {'connected_gene': 'PRKCI', 'score': 10.44}, {'connected_gene': 'RPL22L1', 'score': 9.8}, {'connected_gene': 'CLDN11', 'score': 6.63}, {'connected_gene': 'LOC101928583', 'score': 0.26}, {'connected_gene': 'ENSG00000239739', 'score': 0.26}]
chr3	GH03I170729	170729961	170730822	1.18	[{'connected_gene': 'MYNN', 'score': 18.73}, {'connected_gene': 'PHC3', 'score': 14.02}, {'connected_gene': 'SEC62-AS1', 'score': 12.07}, {'connected_gene': 'PRKCI', 'score': 10.43}, {'connected_gene': 'RPL22L1', 'score': 9.82}, {'connected_gene': 'LOC101928583', 'score': 5.81}, {'connected_gene': 'ENSG00000239739', 'score': 0.39}, {'connected_gene': 'CLDN11', 'score': 0.06}]
chr3	GH03I170764	170764990	170767781	1.19	[{'connected_gene': 'MYNN', 'score': 18.73}, {'connected_gene': 'PHC3', 'score': 14.02}, {'connected_gene': 'SEC62-AS1', 'score': 12.07}, {'connected_gene': 'PRKCI', 'score': 10.42}, {'connected_gene': 'RPL22L1', 'score': 9.86}, {'connected_gene': 'LOC101928583', 'score': 6.11}, {'connected_gene': 'LOC105374211', 'score': 0.77}, {'connected_gene': 'ENSG00000239739', 'score': 0.31}, {'connected_gene': 'CLDN11', 'score': 0.05}]
chr3	GH03I169863	169863513	169863682	0.83	[{'connected_gene': 'MYNN', 'score': 13.4}, {'connected_gene': 'PRKCI', 'score': 11.4}, {'connected_gene': 'SEC62-AS1', 'score': 10.0}, {'connected_gene': 'LRRC31', 'score': 0.44}, {'connected_gene': 'GC03M169659', 'score': 0.28}, {'connected_gene': 'LRRC34', 'score': 0.23}]
chr3	GH03I169771	169771401	169774759	2.11	[{'connected_gene': 'MYNN', 'score': 584.64}, {'connected_gene': 'PIR36992', 'score': 550.77}, {'connected_gene': 'TRV-AAC1-1', 'score': 550.77}, {'connected_gene': 'PHC3', 'score': 16.6}, {'connected_gene': 'PRKCI', 'score': 15.17}, {'connected_gene': 'SEC62-AS1', 'score': 14.08}, {'connected_gene': 'CLDN11', 'score': 9.72}, {'connected_gene': 'LRRC34', 'score': 8.9}, {'connected_gene': 'ENSG00000270096', 'score': 6.89}, {'connected_gene': 'ENSG00000269889', 'score': 0.77}, {'connected_gene': 'ENSG00000269984', 'score': 0.44}, {'connected_gene': 'GC03M169659', 'score': 0.13}]
chr3	GH03I170221	170221601	170225000	2.53	[{'connected_gene': 'PRKCI', 'score': 562.12}, {'connected_gene': 'ENSG00000270096', 'score': 29.99}, {'connected_gene': 'MYNN', 'score': 28.9}, {'connected_gene': 'SEC62-AS1', 'score': 25.1}, {'connected_gene': 'PHC3', 'score': 19.86}, {'connected_gene': 'RPL22P1', 'score': 12.17}, {'connected_gene': 'GPR160', 'score': 11.14}, {'connected_gene': 'RPL22L1', 'score': 10.62}, {'connected_gene': 'SLC7A14', 'score': 10.16}, {'connected_gene': 'LRRC34', 'score': 9.77}, {'connected_gene': 'ENSG00000270135', 'score': 9.69}, {'connected_gene': 'LRRIQ4', 'score': 1.58}, {'connected_gene': 'GC03P170245', 'score': 0.34}]
chr3	GH03I170226	170226801	170227000	0.2	[{'connected_gene': 'PRKCI', 'score': 0.77}, {'connected_gene': 'GC03P170245', 'score': 0.37}]
chr3	GH03I170269	170269460	170271465	0.69	[{'connected_gene': 'GPR160', 'score': 18.21}, {'connected_gene': 'ENSG00000200118', 'score': 0.31}, {'connected_gene': 'GC03P170298', 'score': 0.31}, {'connected_gene': 'PRKCI', 'score': 0.25}]
chr3	GH03I170203	170203753	170204751	0.68	[{'connected_gene': 'GPR160', 'score': 15.01}, {'connected_gene': 'RNU7-32P', 'score': 11.41}, {'connected_gene': 'PRKCI', 'score': 0.37}, {'connected_gene': 'PHC3', 'score': 0.34}]
chr3	GH03I169657	169657493	169669842	2.72	[{'connected_gene': 'MECOM', 'score': 553.96}, {'connected_gene': 'MYNN', 'score': 61.47}, {'connected_gene': 'ENSG00000270096', 'score': 46.64}, {'connected_gene': 'PHC3', 'score': 43.5}, {'connected_gene': 'SEC62-AS1', 'score': 41.89}, {'connected_gene': 'PRKCI', 'score': 22.45}, {'connected_gene': 'RPL22P1', 'score': 12.24}, {'connected_gene': 'SLC7A14', 'score': 10.13}, {'connected_gene': 'ACTRT3', 'score': 4.31}, {'connected_gene': 'ENSG00000242795', 'score': 0.28}, {'connected_gene': 'GC03M169659', 'score': 0.07}]
chr3	GH03I169810	169810997	169814537	1.92	[{'connected_gene': 'LRRC34', 'score': 562.27}, {'connected_gene': 'LRRIQ4', 'score': 550.77}, {'connected_gene': 'PRKCI', 'score': 10.2}, {'connected_gene': 'ENSG00000270096', 'score': 0.37}, {'connected_gene': 'GC03M169659', 'score': 0.17}]
chr3	GH03I170232	170232004	170234476	0.89	[{'connected_gene': 'RNU7-32P', 'score': 11.23}, {'connected_gene': 'GC03P170245', 'score': 0.39}, {'connected_gene': 'PRKCI', 'score': 0.39}]
chr3	GH03I170206	170206533	170206662	0.67	[{'connected_gene': 'RNU7-32P', 'score': 11.39}, {'connected_gene': 'GPR160', 'score': 7.53}, {'connected_gene': 'PRKCI', 'score': 0.37}, {'connected_gene': 'PHC3', 'score': 0.34}]
chr3	GH03I169762	169762886	169765951	1.79	[{'connected_gene': 'GC03M169769', 'score': 550.77}, {'connected_gene': 'GC03M169767', 'score': 550.77}, {'connected_gene': 'TERC', 'score': 550.77}, {'connected_gene': 'ENSG00000277925', 'score': 550.77}, {'connected_gene': 'GC03M169768', 'score': 550.77}, {'connected_gene': 'MYNN', 'score': 33.78}, {'connected_gene': 'SEC62-AS1', 'score': 20.39}, {'connected_gene': 'PHC3', 'score': 20.12}, {'connected_gene': 'PRKCI', 'score': 12.76}, {'connected_gene': 'RPL22P1', 'score': 10.06}, {'connected_gene': 'LRRC34', 'score': 7.28}, {'connected_gene': 'PIR60567', 'score': 0.39}, {'connected_gene': 'GC03M169659', 'score': 0.12}]
chr3	GH03I170276	170276542	170278491	0.58	[{'connected_gene': 'GC03P170298', 'score': 0.34}, {'connected_gene': 'ENSG00000200118', 'score': 0.29}, {'connected_gene': 'PRKCI', 'score': 0.22}]
chr3	GH03I170257	170257923	170259395	0.96	[{'connected_gene': 'ENSG00000239628', 'score': 4.64}, {'connected_gene': 'ENSG00000200118', 'score': 0.39}, {'connected_gene': 'GC03P170298', 'score': 0.28}, {'connected_gene': 'PRKCI', 'score': 0.28}]
chr3	GH03I170343	170343667	170345813	1.14	[{'connected_gene': 'ENSG00000239628', 'score': 560.62}, {'connected_gene': 'ENSG00000242578', 'score': 17.25}, {'connected_gene': 'CLDN11', 'score': 10.29}, {'connected_gene': 'GPR160', 'score': 8.43}, {'connected_gene': 'PRKCI', 'score': 7.64}, {'connected_gene': 'GC03P170298', 'score': 0.25}]
chr3	GH03I170159	170159146	170163629	0.6	[{'connected_gene': 'GC03P170161', 'score': 550.77}, {'connected_gene': 'RNU7-32P', 'score': 550.77}, {'connected_gene': 'GPR160', 'score': 33.42}, {'connected_gene': 'PRKCI', 'score': 9.92}, {'connected_gene': 'PHC3', 'score': 0.34}]