PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297338	[[117858173, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864335], [117864787, 117864947], [117866483, 117866707], [117868404, 117868527], [117868884, 117869010], [117869505, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117879000], [117886849, 117887105]]	[[117859738, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864335], [117864787, 117864947], [117866483, 117866707], [117868404, 117868527], [117868884, 117869010], [117869505, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117878968]]
ENST00000523986	[[117859143, 117859930], [117861184, 117861268], [117862856, 117864491]]	[[117859738, 117859930], [117861184, 117861268], [117862856, 117862988]]
ENST00000517749	[[117859465, 117859930], [117861184, 117861722]]	[[117859738, 117859930], [117861184, 117861202]]
ENST00000518055	[[117859572, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864490]]	[[117859738, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864291]]
ENST00000520992	[[117869509, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117879000], [117886548, 117886663]]	[[117869509, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117878968]]
ENST00000517485	[[117869517, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117879000], [117886601, 117886767]]	[[117869517, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117878968]]
ENST00000523547	[[117869527, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117879000], [117886357, 117886567]]	None
ENST00000519837	[[117874081, 117874179], [117875368, 117875498], [117878824, 117879000], [117886488, 117886599]]	[[117874081, 117874179], [117875368, 117875498], [117878824, 117878968]]
ENST00000522699	[[117874092, 117874179], [117875368, 117875498], [117878824, 117879000], [117886444, 117886599]]	[[117874092, 117874179], [117875368, 117875498], [117878824, 117878968]]
ENST00000519469	[[117875355, 117875498], [117878824, 117879230]]	None
NM_006265	[[117858172, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864335], [117864787, 117864947], [117866483, 117866707], [117868404, 117868527], [117868884, 117869010], [117869505, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117879000], [117886849, 117887105]]	[[117859738, 117859930], [117861184, 117861268], [117862856, 117863006], [117864186, 117864335], [117864787, 117864947], [117866483, 117866707], [117868404, 117868527], [117868884, 117869010], [117869505, 117869712], [117870590, 117870697], [117874079, 117874179], [117875368, 117875498], [117878824, 117878968]]

Promoter

Chrom	Start	End	Description
chr8	117878863	117878874	CAGE_peak_15_at_RAD21_5end
chr8	117878953	117878961	CAGE_peak_29_at_RAD21_5end
chr8	117879183	117879190	CAGE_peak_39_at_RAD21_5end
chr8	117879221	117879238	CAGE_peak_27_at_RAD21_5end
chr8	117879290	117879301	CAGE_peak_36_at_RAD21_5end
chr8	117879312	117879331	CAGE_peak_33_at_RAD21_5end
chr8	117886359	117886370	CAGE_peak_35_at_RAD21_5end
chr8	117886399	117886420	CAGE_peak_25_at_RAD21_5end
chr8	117886563	117886605	CAGE_peak_3_at_RAD21_5end
chr8	117886612	117886673	CAGE_peak_1_at_RAD21_5end
chr8	117886706	117886710	CAGE_peak_14_at_RAD21_5end
chr8	117886732	117886748	CAGE_peak_6_at_RAD21_5end
chr8	117886797	117886806	CAGE_peak_8_at_RAD21_5end
chr8	117886814	117886833	CAGE_peak_5_at_RAD21_5end
chr8	117886841	117886847	CAGE_peak_21_at_RAD21_5end
chr8	117886864	117886910	CAGE_peak_2_at_RAD21_5end
chr8	117887155	117887163	CAGE_peak_31_at_RAD21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I116765	116765379	116768303	2.06	[{'connected_gene': 'UTP23', 'score': 565.0}, {'connected_gene': 'EIF3H', 'score': 562.72}, {'connected_gene': 'MED30', 'score': 10.37}, {'connected_gene': 'RAD21', 'score': 5.15}]
chr8	GH08I116837	116837842	116837931	0.63	[{'connected_gene': 'RAD21-AS1', 'score': 10.52}, {'connected_gene': 'RAD21', 'score': 10.52}, {'connected_gene': 'GC08P116801', 'score': 0.28}, {'connected_gene': 'UTP23', 'score': 0.19}]
chr8	GH08I116849	116849342	116849551	0.31	[{'connected_gene': 'RAD21-AS1', 'score': 12.01}, {'connected_gene': 'RAD21', 'score': 11.98}, {'connected_gene': 'GC08P116801', 'score': 0.25}, {'connected_gene': 'UTP23', 'score': 0.18}]
chr8	GH08I116843	116843791	116844572	0.43	[{'connected_gene': 'RAD21-AS1', 'score': 11.58}, {'connected_gene': 'RAD21', 'score': 11.58}, {'connected_gene': 'GC08P116801', 'score': 0.26}, {'connected_gene': 'UTP23', 'score': 0.18}]
chr8	GH08I116851	116851262	116851411	0.56	[{'connected_gene': 'RAD21-AS1', 'score': 0.34}, {'connected_gene': 'RAD21', 'score': 0.34}, {'connected_gene': 'GC08P116801', 'score': 0.25}]
chr8	GH08I116869	116869927	116875471	2.48	[{'connected_gene': 'RAD21', 'score': 564.65}, {'connected_gene': 'RAD21-AS1', 'score': 550.77}, {'connected_gene': 'MED30', 'score': 10.37}, {'connected_gene': 'UTP23', 'score': 8.34}, {'connected_gene': 'MIR3610', 'score': 0.77}, {'connected_gene': 'GC08P116801', 'score': 0.19}]
chr8	GH08I116900	116900608	116902397	0.76	[{'connected_gene': 'RAD21', 'score': 24.33}, {'connected_gene': 'RAD21-AS1', 'score': 11.43}, {'connected_gene': 'AARD', 'score': 10.89}, {'connected_gene': 'SLC30A8', 'score': 10.59}, {'connected_gene': 'PIR55072', 'score': 0.34}, {'connected_gene': 'GC08P116801', 'score': 0.15}]
chr8	GH08I116868	116868001	116868201	0.31	[{'connected_gene': 'RAD21', 'score': 6.8}, {'connected_gene': 'RAD21-AS1', 'score': 0.44}, {'connected_gene': 'GC08P116801', 'score': 0.2}]
chr8	GH08I116889	116889529	116891529	0.98	[{'connected_gene': 'RAD21', 'score': 13.55}, {'connected_gene': 'AARD', 'score': 11.26}, {'connected_gene': 'SLC30A8', 'score': 10.68}, {'connected_gene': 'PIR55072', 'score': 0.39}, {'connected_gene': 'GC08P116801', 'score': 0.17}]
chr8	GH08I116650	116650654	116653600	1.11	[{'connected_gene': 'RAD21', 'score': 1.24}, {'connected_gene': 'LOC105375713', 'score': 0.77}, {'connected_gene': 'UTP23', 'score': 0.14}, {'connected_gene': 'EIF3H', 'score': 0.14}]
chr8	GH08I116915	116915834	116917207	0.31	[{'connected_gene': 'AARD', 'score': 11.31}, {'connected_gene': 'SLC30A8', 'score': 10.69}, {'connected_gene': 'RAD21', 'score': 7.9}, {'connected_gene': 'PIR55072', 'score': 0.28}, {'connected_gene': 'GC08P116801', 'score': 0.14}]
chr8	GH08I117118	117118174	117118559	0.22	[{'connected_gene': 'SLC30A8', 'score': 16.28}, {'connected_gene': 'RAD21', 'score': 1.52}, {'connected_gene': 'LOC105375719', 'score': 0.39}, {'connected_gene': 'ENSG00000253622', 'score': 0.39}, {'connected_gene': 'LOC105375716', 'score': 0.05}]
chr8	GH08I116975	116975466	116975707	0.44	[{'connected_gene': 'SLC30A8', 'score': 11.14}, {'connected_gene': 'RAD21', 'score': 1.52}, {'connected_gene': 'PIR54682', 'score': 0.29}, {'connected_gene': 'GC08P116801', 'score': 0.09}]
chr8	GH08I116878	116878958	116879248	1	[{'connected_gene': 'PIR55072', 'score': 550.77}, {'connected_gene': 'RAD21', 'score': 7.19}, {'connected_gene': 'UTP23', 'score': 2.13}, {'connected_gene': 'GC08M116875', 'score': 0.77}, {'connected_gene': 'GC08P116801', 'score': 0.18}]
chr8	GH08I116879	116879733	116881536	0.49	[{'connected_gene': 'PIR55072', 'score': 550.77}, {'connected_gene': 'RAD21', 'score': 8.27}, {'connected_gene': 'AARD', 'score': 0.22}, {'connected_gene': 'GC08P116801', 'score': 0.18}]
chr8	GH08I116877	116877700	116877984	1	[{'connected_gene': 'GC08M116875', 'score': 550.77}, {'connected_gene': 'RAD21', 'score': 2.66}, {'connected_gene': 'PIR55072', 'score': 0.77}, {'connected_gene': 'GC08P116801', 'score': 0.18}]
chr8	GH08I116801	116801631	116803543	0.64	[{'connected_gene': 'GC08P116801', 'score': 550.77}, {'connected_gene': 'AARD', 'score': 11.24}, {'connected_gene': 'RAD21-AS1', 'score': 11.06}, {'connected_gene': 'RAD21', 'score': 11.06}, {'connected_gene': 'UTP23', 'score': 0.28}]
chr8	GH08I116802	116801182	116801331	0.43	[{'connected_gene': 'GC08P116801', 'score': 550.77}, {'connected_gene': 'AARD', 'score': 11.24}, {'connected_gene': 'RAD21-AS1', 'score': 11.06}, {'connected_gene': 'RAD21', 'score': 11.06}, {'connected_gene': 'UTP23', 'score': 0.29}, {'connected_gene': 'GC08P116769', 'score': 0.29}]