PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000534663	[[36537013, 36537081], [36541681, 36541779], [36557525, 36557584], [36584934, 36585048], [36587326, 36587430], [36587996, 36588101], [36588905, 36588979], [36594840, 36597643], [36611933, 36612025], [36614516, 36614706]]	[[36594854, 36597643], [36611933, 36611940]]
ENST00000529126	[[36532258, 36532588], [36541681, 36541779], [36557508, 36557562]]	None
ENST00000299440	[[36589574, 36589672], [36594840, 36601306]]	[[36594854, 36597986]]
NM_000448	[[36589562, 36589672], [36594840, 36601312]]	[[36594854, 36597986]]

Promoter

Chrom	Start	End	Description
chr11	36531897	36531927	CAGE_peak_3_at_RAG1_5end
chr11	36589320	36589332	CAGE_peak_4_at_RAG1_5end
chr11	36589527	36589538	CAGE_peak_2_at_RAG1_5end
chr11	36589547	36589570	CAGE_peak_1_at_RAG1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I036469	36469060	36471074	0.72	[{'connected_gene': 'PRR5L', 'score': 18.95}, {'connected_gene': 'ENSG00000255060', 'score': 11.85}, {'connected_gene': 'RAG1', 'score': 10.92}, {'connected_gene': 'TRAF6', 'score': 10.92}, {'connected_gene': 'COMMD9', 'score': 10.86}, {'connected_gene': 'GC11M036483', 'score': 0.37}, {'connected_gene': 'GC11P036439', 'score': 0.29}]
chr11	GH11I036507	36507872	36513056	2.09	[{'connected_gene': 'TRAF6', 'score': 569.26}, {'connected_gene': 'GC11P036511', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 550.77}, {'connected_gene': 'ENSG00000280331', 'score': 550.77}, {'connected_gene': 'GC11P036512', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 5.77}, {'connected_gene': 'COMMD9', 'score': 4.77}, {'connected_gene': 'GC11M036546', 'score': 0.28}]
chr11	GH11I036619	36619436	36619674	0.83	[{'connected_gene': 'RAG2', 'score': 5.9}, {'connected_gene': 'RAG1', 'score': 5.11}, {'connected_gene': 'PRR5L', 'score': 3.46}, {'connected_gene': 'GC11M036597', 'score': 0.39}, {'connected_gene': 'C11orf74', 'score': 0.31}, {'connected_gene': 'GC11M036644', 'score': 0.28}]
chr11	GH11I036571	36571933	36572368	0.46	[{'connected_gene': 'RAG2', 'score': 18.72}, {'connected_gene': 'RAG1', 'score': 18.69}, {'connected_gene': 'TRAF6', 'score': 10.69}, {'connected_gene': 'GC11P036555', 'score': 0.37}, {'connected_gene': 'C11orf74', 'score': 0.34}]
chr11	GH11I036596	36596326	36596713	0.46	[{'connected_gene': 'RAG2', 'score': 581.45}, {'connected_gene': 'RAG1', 'score': 39.96}, {'connected_gene': 'C11orf74', 'score': 0.77}]
chr11	GH11I036626	36626493	36628903	0.91	[{'connected_gene': 'RAG2', 'score': 12.61}, {'connected_gene': 'C11orf74', 'score': 11.77}, {'connected_gene': 'RAG1', 'score': 10.48}, {'connected_gene': 'TRAF6', 'score': 10.48}, {'connected_gene': 'GC11M036597', 'score': 0.34}, {'connected_gene': 'GC11M036644', 'score': 0.31}]
chr11	GH11I036629	36629646	36632273	0.43	[{'connected_gene': 'RAG2', 'score': 11.72}, {'connected_gene': 'C11orf74', 'score': 11.7}, {'connected_gene': 'RAG1', 'score': 10.3}, {'connected_gene': 'TRAF6', 'score': 10.3}, {'connected_gene': 'GC11M036644', 'score': 0.34}, {'connected_gene': 'GC11M036597', 'score': 0.31}]
chr11	GH11I036558	36558180	36560450	0.54	[{'connected_gene': 'RAG2', 'score': 12.21}, {'connected_gene': 'C11orf74', 'score': 12.08}, {'connected_gene': 'GC11P036555', 'score': 0.77}, {'connected_gene': 'RAG1', 'score': 0.25}]
chr11	GH11I036577	36577137	36578490	0.76	[{'connected_gene': 'RAG2', 'score': 11.77}, {'connected_gene': 'C11orf74', 'score': 0.37}, {'connected_gene': 'GC11P036555', 'score': 0.34}, {'connected_gene': 'RAG1', 'score': 0.2}]
chr11	GH11I036292	36292600	36292800	0.72	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036293	36292411	36292560	0.78	[{'connected_gene': 'RAG1', 'score': 10.63}, {'connected_gene': 'TRAF6', 'score': 10.63}, {'connected_gene': 'ENSG00000255060', 'score': 10.31}, {'connected_gene': 'COMMD9', 'score': 0.77}, {'connected_gene': 'PRR5L', 'score': 0.77}]
chr11	GH11I036541	36541000	36541401	0.95	[{'connected_gene': 'RAG1', 'score': 11.98}, {'connected_gene': 'TRAF6', 'score': 11.98}, {'connected_gene': 'C11orf74', 'score': 10.2}, {'connected_gene': 'RAG2', 'score': 10.19}, {'connected_gene': 'GC11M036546', 'score': 0.44}]
chr11	GH11I036569	36569122	36569460	0.42	[{'connected_gene': 'RAG1', 'score': 34.08}, {'connected_gene': 'RAG2', 'score': 30.22}, {'connected_gene': 'C11orf74', 'score': 12.0}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I036683	36683969	36684121	0.43	[{'connected_gene': 'RAG1', 'score': 6.55}, {'connected_gene': 'RAG2', 'score': 6.12}, {'connected_gene': 'LOC100422241', 'score': 0.39}, {'connected_gene': 'GC11P036666', 'score': 0.37}]
chr11	GH11I036685	36685228	36685502	0.46	[{'connected_gene': 'RAG1', 'score': 12.1}, {'connected_gene': 'RAG2', 'score': 10.3}, {'connected_gene': 'LOC100422241', 'score': 0.39}, {'connected_gene': 'GC11P036666', 'score': 0.37}]
chr11	GH11I036567	36567963	36568022	0.7	[{'connected_gene': 'RAG1', 'score': 560.42}, {'connected_gene': 'C11orf74', 'score': 11.97}, {'connected_gene': 'RAG2', 'score': 11.95}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I036564	36564414	36565000	1	[{'connected_gene': 'C11orf74', 'score': 12.07}, {'connected_gene': 'RAG2', 'score': 12.05}, {'connected_gene': 'PRR5L', 'score': 4.87}, {'connected_gene': 'GC11P036555', 'score': 0.44}, {'connected_gene': 'RAG1', 'score': 0.23}]
chr11	GH11I036487	36487164	36488983	0.4	[{'connected_gene': 'GC11M036483', 'score': 550.77}, {'connected_gene': 'PRR5L', 'score': 17.72}, {'connected_gene': 'TRAF6', 'score': 16.98}, {'connected_gene': 'RAG1', 'score': 12.13}, {'connected_gene': 'COMMD9', 'score': 11.12}, {'connected_gene': 'ENSG00000255060', 'score': 10.71}]
chr11	GH11I036603	36603941	36606179	0.49	[{'connected_gene': 'GC11M036597', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 10.06}, {'connected_gene': 'TRAF6', 'score': 10.06}, {'connected_gene': 'RAG2', 'score': 0.44}, {'connected_gene': 'C11orf74', 'score': 0.39}]
chr11	GH11I036606	36606420	36607491	0.2	[{'connected_gene': 'GC11M036597', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 10.06}, {'connected_gene': 'TRAF6', 'score': 10.06}, {'connected_gene': 'C11orf74', 'score': 0.39}, {'connected_gene': 'GC11M036644', 'score': 0.25}]
chr11	GH11I036312	36312229	36313400	0.64	[{'connected_gene': 'ENSG00000255060', 'score': 10.95}, {'connected_gene': 'COMMD9', 'score': 10.78}, {'connected_gene': 'RAG1', 'score': 10.04}, {'connected_gene': 'TRAF6', 'score': 10.04}, {'connected_gene': 'RAG2', 'score': 9.58}, {'connected_gene': 'C11orf74', 'score': 9.2}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.37}]