PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000372037	[[88516406, 88516676], [88598621, 88598736], [88635623, 88635842], [88649818, 88649981], [88651883, 88651986], [88659550, 88659647], [88659783, 88659883], [88671996, 88672141], [88676890, 88677083], [88678928, 88679226], [88681276, 88681452], [88683132, 88683263], [88683350, 88692595]]	[[88635775, 88635842], [88649818, 88649981], [88651883, 88651986], [88659550, 88659647], [88659783, 88659883], [88671996, 88672141], [88676890, 88677083], [88678928, 88679226], [88681276, 88681452], [88683132, 88683263], [88683350, 88683476]]
ENST00000480152	[[88598695, 88598736], [88603162, 88603267], [88635623, 88635842], [88649818, 88649874]]	None
NM_004329	[[88516395, 88516676], [88598621, 88598736], [88635623, 88635842], [88649818, 88649981], [88651883, 88651986], [88659550, 88659647], [88659783, 88659883], [88671996, 88672141], [88676890, 88677083], [88678928, 88679226], [88681276, 88681452], [88683132, 88683263], [88683350, 88684945]]	[[88635775, 88635842], [88649818, 88649981], [88651883, 88651986], [88659550, 88659647], [88659783, 88659883], [88671996, 88672141], [88676890, 88677083], [88678928, 88679226], [88681276, 88681452], [88683132, 88683263], [88683350, 88683476]]

Promoter

Chrom	Start	End	Description
chr10	88516282	88516301	CAGE_peak_3_at_BMPR1A_5end
chr10	88516341	88516391	CAGE_peak_1_at_BMPR1A_5end
chr10	88516396	88516426	CAGE_peak_2_at_BMPR1A_5end
chr10	88516519	88516533	CAGE_peak_5_at_BMPR1A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I086770	86770564	86770713	0.38	[{'connected_gene': 'SNCG', 'score': 10.47}, {'connected_gene': 'MMRN2', 'score': 10.46}, {'connected_gene': 'ADIRF', 'score': 10.46}, {'connected_gene': 'BMPR1A', 'score': 0.39}, {'connected_gene': 'GC10M086750', 'score': 0.39}, {'connected_gene': 'GC10M086786', 'score': 0.37}]
chr10	GH10I086683	86683114	86689569	1.56	[{'connected_gene': 'BMPR1A', 'score': 8.09}, {'connected_gene': 'OPN4', 'score': 5.78}, {'connected_gene': 'LDB3', 'score': 0.37}, {'connected_gene': 'GC10M086714', 'score': 0.31}]
chr10	GH10I086795	86795004	86795948	0.92	[{'connected_gene': 'BMPR1A', 'score': 29.51}, {'connected_gene': 'OPN4', 'score': 6.75}, {'connected_gene': 'GC10M086786', 'score': 0.44}, {'connected_gene': 'RPAP2P1', 'score': 0.21}]
chr10	GH10I086741	86741714	86745542	0.43	[{'connected_gene': 'BMPR1A', 'score': 10.89}, {'connected_gene': 'MMRN2', 'score': 10.39}, {'connected_gene': 'ADIRF', 'score': 10.39}, {'connected_gene': 'SNCG', 'score': 10.05}, {'connected_gene': 'ENSG00000272631', 'score': 8.85}, {'connected_gene': 'GC10M086714', 'score': 0.31}]
chr10	GH10I086747	86747618	86748504	0.77	[{'connected_gene': 'BMPR1A', 'score': 13.35}, {'connected_gene': 'MMRN2', 'score': 10.39}, {'connected_gene': 'ADIRF', 'score': 10.39}, {'connected_gene': 'SNCG', 'score': 10.05}, {'connected_gene': 'ENSG00000272631', 'score': 8.22}, {'connected_gene': 'GC10M086714', 'score': 0.29}]
chr10	GH10I086870	86870359	86872273	0.76	[{'connected_gene': 'BMPR1A', 'score': 15.02}, {'connected_gene': 'NUTM2A-AS1', 'score': 4.61}, {'connected_gene': 'RPAP2P1', 'score': 0.39}, {'connected_gene': 'RNU1-19P', 'score': 0.37}]
chr10	GH10I086774	86774696	86776104	1.18	[{'connected_gene': 'BMPR1A', 'score': 10.11}, {'connected_gene': 'NUTM2A', 'score': 4.93}, {'connected_gene': 'GC10M086786', 'score': 0.39}, {'connected_gene': 'GC10M086750', 'score': 0.37}]
chr10	GH10I086851	86851242	86851896	0.46	[{'connected_gene': 'BMPR1A', 'score': 36.82}, {'connected_gene': 'SNCG', 'score': 10.24}, {'connected_gene': 'MMRN2', 'score': 10.22}, {'connected_gene': 'ADIRF', 'score': 10.22}, {'connected_gene': 'RPAP2P1', 'score': 0.77}, {'connected_gene': 'GC10M086786', 'score': 0.21}]
chr10	GH10I086917	86917763	86918959	0.54	[{'connected_gene': 'BMPR1A', 'score': 39.81}, {'connected_gene': 'SNCG', 'score': 11.05}, {'connected_gene': 'ADIRF', 'score': 11.03}, {'connected_gene': 'MMRN2', 'score': 11.02}, {'connected_gene': 'ENSG00000151303', 'score': 10.69}, {'connected_gene': 'BMS1P3', 'score': 4.71}, {'connected_gene': 'GC10P086921', 'score': 0.77}, {'connected_gene': 'GC10P086890', 'score': 0.31}]
chr10	GH10I086861	86861598	86869884	1.23	[{'connected_gene': 'BMPR1A', 'score': 36.7}, {'connected_gene': 'BMS1P3', 'score': 4.64}, {'connected_gene': 'NUTM2A-AS1', 'score': 4.63}, {'connected_gene': 'RPAP2P1', 'score': 0.44}, {'connected_gene': 'RNU1-19P', 'score': 0.34}]
chr10	GH10I086853	86853141	86853825	0.2	[{'connected_gene': 'BMPR1A', 'score': 27.78}, {'connected_gene': 'BMS1P3', 'score': 4.66}, {'connected_gene': 'NUTM2A-AS1', 'score': 4.29}, {'connected_gene': 'RPAP2P1', 'score': 0.77}, {'connected_gene': 'GC10M086786', 'score': 0.2}]
chr10	GH10I086798	86798413	86799838	0.87	[{'connected_gene': 'BMPR1A', 'score': 36.18}, {'connected_gene': 'GLUD1', 'score': 4.43}, {'connected_gene': 'GC10M086786', 'score': 0.39}, {'connected_gene': 'RPAP2P1', 'score': 0.22}]
chr10	GH10I086705	86705369	86707880	0.64	[{'connected_gene': 'BMPR1A', 'score': 12.21}, {'connected_gene': 'GC10M086714', 'score': 0.44}, {'connected_gene': 'LDB3', 'score': 0.28}]
chr10	GH10I086721	86721178	86721822	0.66	[{'connected_gene': 'BMPR1A', 'score': 8.96}, {'connected_gene': 'ENSG00000272631', 'score': 6.3}, {'connected_gene': 'GC10M086714', 'score': 0.44}, {'connected_gene': 'LDB3', 'score': 0.23}]
chr10	GH10I086731	86731281	86734898	0.86	[{'connected_gene': 'BMPR1A', 'score': 26.91}, {'connected_gene': 'ENSG00000272631', 'score': 6.25}, {'connected_gene': 'GC10M086714', 'score': 0.37}, {'connected_gene': 'LDB3', 'score': 0.2}]
chr10	GH10I086726	86726796	86728616	0.8	[{'connected_gene': 'BMPR1A', 'score': 24.25}, {'connected_gene': 'LDB3', 'score': 12.06}, {'connected_gene': 'GC10M086714', 'score': 0.39}]
chr10	GH10I086696	86696326	86697240	0.31	[{'connected_gene': 'BMPR1A', 'score': 6.49}, {'connected_gene': 'GC10M086714', 'score': 0.37}, {'connected_gene': 'LDB3', 'score': 0.29}]
chr10	GH10I086710	86710070	86713000	1.77	[{'connected_gene': 'BMPR1A', 'score': 8.85}, {'connected_gene': 'LDB3', 'score': 1.86}, {'connected_gene': 'GC10M086714', 'score': 0.77}]
chr10	GH10I086730	86730364	86730513	0.87	[{'connected_gene': 'BMPR1A', 'score': 18.6}, {'connected_gene': 'GC10M086714', 'score': 0.37}, {'connected_gene': 'LDB3', 'score': 0.21}]
chr10	GH10I086702	86702210	86703616	0.46	[{'connected_gene': 'BMPR1A', 'score': 12.19}, {'connected_gene': 'GC10M086714', 'score': 0.39}, {'connected_gene': 'LDB3', 'score': 0.28}]
chr10	GH10I086872	86872715	86873607	0.76	[{'connected_gene': 'BMPR1A', 'score': 6.74}, {'connected_gene': 'RNU1-19P', 'score': 0.37}, {'connected_gene': 'RPAP2P1', 'score': 0.37}]
chr10	GH10I086793	86793563	86794390	0.2	[{'connected_gene': 'BMPR1A', 'score': 11.76}, {'connected_gene': 'GC10M086786', 'score': 0.44}, {'connected_gene': 'RPAP2P1', 'score': 0.21}]
chr10	GH10I086823	86823265	86824453	0.49	[{'connected_gene': 'BMPR1A', 'score': 11.05}, {'connected_gene': 'ENSG00000272631', 'score': 4.87}, {'connected_gene': 'RPAP2P1', 'score': 0.29}, {'connected_gene': 'GC10M086786', 'score': 0.28}]
chr10	GH10I086840	86840644	86840793	0.38	[{'connected_gene': 'BMPR1A', 'score': 10.46}, {'connected_gene': 'RPAP2P1', 'score': 0.37}, {'connected_gene': 'GC10M086786', 'score': 0.23}]
chr10	GH10I086900	86900618	86901513	0.38	[{'connected_gene': 'BMPR1A', 'score': 39.94}, {'connected_gene': 'GC10P086890', 'score': 0.39}, {'connected_gene': 'GC10P086921', 'score': 0.34}]
chr10	GH10I086737	86737447	86741187	0.2	[{'connected_gene': 'BMPR1A', 'score': 10.9}, {'connected_gene': 'ENSG00000272631', 'score': 6.28}, {'connected_gene': 'GC10M086714', 'score': 0.34}]
chr10	GH10I086899	86899125	86899973	0.63	[{'connected_gene': 'BMPR1A', 'score': 19.15}, {'connected_gene': 'GC10P086890', 'score': 0.44}, {'connected_gene': 'GC10P086921', 'score': 0.34}]
chr10	GH10I086689	86689596	86693050	0.31	[{'connected_gene': 'FAM35A', 'score': 5.18}, {'connected_gene': 'BMPR1A', 'score': 4.84}, {'connected_gene': 'LDB3', 'score': 0.34}, {'connected_gene': 'GC10M086714', 'score': 0.34}]
chr10	GH10I087090	87090809	87096982	2.31	[{'connected_gene': 'FAM35A', 'score': 570.9}, {'connected_gene': 'GLUD1', 'score': 550.77}, {'connected_gene': 'NUTM2A-AS1', 'score': 36.57}, {'connected_gene': 'ENSG00000272631', 'score': 34.41}, {'connected_gene': 'WAPL', 'score': 24.98}, {'connected_gene': 'BMPR1A', 'score': 22.65}, {'connected_gene': 'CFL1P1', 'score': 20.56}, {'connected_gene': 'RPL11P3', 'score': 11.19}, {'connected_gene': 'ENSG00000227896', 'score': 10.93}, {'connected_gene': 'BMS1P3', 'score': 10.43}, {'connected_gene': 'ADIRF-AS1', 'score': 9.84}, {'connected_gene': 'OPN4', 'score': 7.62}, {'connected_gene': 'NUTM2A', 'score': 7.49}, {'connected_gene': 'GC10M087058', 'score': 0.29}]
chr10	GH10I086436	86436572	86443907	1.34	[{'connected_gene': 'RNU6-780P', 'score': 11.72}, {'connected_gene': 'ENSG00000227896', 'score': 11.46}, {'connected_gene': 'WAPL', 'score': 11.46}, {'connected_gene': 'LDB3', 'score': 6.39}, {'connected_gene': 'OPN4', 'score': 5.53}, {'connected_gene': 'BMPR1A', 'score': 4.71}, {'connected_gene': 'GC10P086443', 'score': 0.77}, {'connected_gene': 'GC10M086380', 'score': 0.22}]
chr10	GH10I086888	86888292	86889711	1.08	[{'connected_gene': 'RNU1-19P', 'score': 550.77}, {'connected_gene': 'GC10P086890', 'score': 550.77}, {'connected_gene': 'BMPR1A', 'score': 12.77}, {'connected_gene': 'BMS1P3', 'score': 5.32}, {'connected_gene': 'RPAP2P1', 'score': 0.29}]
chr10	GH10I086717	86717738	86719095	0.43	[{'connected_gene': 'NPAP1P3', 'score': 5.23}, {'connected_gene': 'GC10M086714', 'score': 0.77}, {'connected_gene': 'BMPR1A', 'score': 0.28}, {'connected_gene': 'LDB3', 'score': 0.23}]
chr10	GH10I086854	86854536	86858269	0.89	[{'connected_gene': 'RPAP2P1', 'score': 550.77}, {'connected_gene': 'BMPR1A', 'score': 28.2}, {'connected_gene': 'BMS1P3', 'score': 5.28}, {'connected_gene': 'NUTM2A-AS1', 'score': 4.29}, {'connected_gene': 'GC10M086786', 'score': 0.2}]
chr10	GH10I086829	86829982	86830593	0.2	[{'connected_gene': 'RPAP2P1', 'score': 0.31}, {'connected_gene': 'GC10M086786', 'score': 0.26}, {'connected_gene': 'BMPR1A', 'score': 0.19}]
chr10	GH10I086965	86965954	86973708	2.13	[{'connected_gene': 'ADIRF-AS1', 'score': 558.86}, {'connected_gene': 'ENSG00000273413', 'score': 550.77}, {'connected_gene': 'AGAP11', 'score': 550.77}, {'connected_gene': 'MMRN2', 'score': 550.77}, {'connected_gene': 'ADIRF', 'score': 550.77}, {'connected_gene': 'SNCG', 'score': 8.99}, {'connected_gene': 'ENSG00000261011', 'score': 8.24}, {'connected_gene': 'BMS1P3', 'score': 7.74}, {'connected_gene': 'BMPR1A', 'score': 4.94}, {'connected_gene': 'GRID1', 'score': 4.71}, {'connected_gene': 'LINC00863', 'score': 4.52}, {'connected_gene': 'NUTM2A', 'score': 4.25}, {'connected_gene': 'GC10P086949', 'score': 0.37}]
chr10	GH10I086922	86922226	86923418	0.46	[{'connected_gene': 'GC10P086921', 'score': 550.77}, {'connected_gene': 'BMPR1A', 'score': 27.34}, {'connected_gene': 'MMRN2', 'score': 11.52}, {'connected_gene': 'ADIRF', 'score': 11.52}, {'connected_gene': 'ENSG00000151303', 'score': 11.48}, {'connected_gene': 'ENSG00000281974', 'score': 0.31}]
chr10	GH10I086752	86752404	86759776	2.75	[{'connected_gene': 'ENSG00000272631', 'score': 578.45}, {'connected_gene': 'BMPR1A', 'score': 561.74}, {'connected_gene': 'GC10M086750', 'score': 550.77}, {'connected_gene': 'WAPL', 'score': 33.14}, {'connected_gene': 'NUTM2A-AS1', 'score': 22.45}, {'connected_gene': 'ENSG00000227896', 'score': 20.64}, {'connected_gene': 'FAM35A', 'score': 11.35}, {'connected_gene': 'GLUD1', 'score': 2.07}]
chr10	GH10I086714	86714694	86717406	0.46	[{'connected_gene': 'GC10M086714', 'score': 550.77}, {'connected_gene': 'BMPR1A', 'score': 5.99}, {'connected_gene': 'NPAP1P3', 'score': 5.2}, {'connected_gene': 'LDB3', 'score': 0.25}]
chr10	GH10I086802	86802064	86802213	0.2	[{'connected_gene': 'GC10M086786', 'score': 0.39}, {'connected_gene': 'BMPR1A', 'score': 0.25}, {'connected_gene': 'RPAP2P1', 'score': 0.23}]
chr10	GH10I086785	86785991	86786853	0.31	[{'connected_gene': 'GC10M086786', 'score': 550.77}, {'connected_gene': 'BMPR1A', 'score': 29.89}, {'connected_gene': 'GC10M086750', 'score': 0.31}]
chr10	GH10I087585	87585074	87587686	0.98	[{'connected_gene': 'ENSG00000272631', 'score': 59.44}, {'connected_gene': 'CFL1P1', 'score': 31.99}, {'connected_gene': 'NUTM2A', 'score': 22.87}, {'connected_gene': 'LINC00863', 'score': 21.87}, {'connected_gene': 'FAM35A', 'score': 21.82}, {'connected_gene': 'ATAD1', 'score': 12.99}, {'connected_gene': 'BMPR1A', 'score': 10.98}, {'connected_gene': 'BMS1P3', 'score': 10.3}, {'connected_gene': 'NUTM2A-AS1', 'score': 9.75}, {'connected_gene': 'GC10P087578', 'score': 0.44}, {'connected_gene': 'LOC105378412', 'score': 0.39}]
chr10	GH10I086815	86815001	86815600	0.4	[{'connected_gene': 'GC10M086786', 'score': 0.31}, {'connected_gene': 'RPAP2P1', 'score': 0.26}, {'connected_gene': 'BMPR1A', 'score': 0.22}]