PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000533692	[[4406126, 4406624], [4406907, 4407083], [4407386, 4407418]]	[[4406561, 4406624], [4406907, 4407083], [4407386, 4407418]]
ENST00000254436	[[4406131, 4407083], [4407386, 4407487], [4408197, 4408220], [4409529, 4409760], [4410883, 4410979], [4411231, 4411688], [4414862, 4414926]]	[[4406514, 4407083], [4407386, 4407487], [4408197, 4408220], [4409529, 4409760], [4410883, 4410979], [4411231, 4411639]]
ENST00000543625	[[4406157, 4407083], [4407386, 4407493], [4407536, 4407553], [4409529, 4409760], [4410883, 4410979], [4411231, 4411688], [4414862, 4414926]]	[[4406514, 4407083], [4407386, 4407493], [4407536, 4407553], [4409529, 4409760], [4410883, 4410979], [4411231, 4411639]]
NM_003141	[[4406126, 4407083], [4407386, 4407487], [4408197, 4408220], [4409529, 4409760], [4410883, 4410979], [4411231, 4411688], [4414862, 4414926]]	[[4406514, 4407083], [4407386, 4407487], [4408197, 4408220], [4409529, 4409760], [4410883, 4410979], [4411231, 4411639]]

Promoter

Chrom	Start	End	Description
chr11	4414880	4414953	CAGE_peak_1_at_TRIM21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I004392	4392640	4394320	2.12	[{'connected_gene': 'TRIM21', 'score': 557.14}, {'connected_gene': 'OR52K3P', 'score': 12.87}, {'connected_gene': 'OR52K2', 'score': 2.2}, {'connected_gene': 'OR52B3P', 'score': 0.37}]
chr11	GH11I004484	4484418	4484530	0.22	[{'connected_gene': 'OR52K1', 'score': 556.65}, {'connected_gene': 'TRIM21', 'score': 4.76}, {'connected_gene': 'OR51F2', 'score': 3.84}, {'connected_gene': 'OR52K2', 'score': 2.23}, {'connected_gene': 'OR51D1', 'score': 1.85}, {'connected_gene': 'OR51T1', 'score': 1.79}, {'connected_gene': 'OR51G1', 'score': 1.66}, {'connected_gene': 'OR52M2P', 'score': 0.29}]
chr11	GH11I004455	4455327	4456000	1.02	[{'connected_gene': 'OR52K3P', 'score': 27.64}, {'connected_gene': 'OR52K1', 'score': 10.94}, {'connected_gene': 'TRIM21', 'score': 7.78}, {'connected_gene': 'OR52K2', 'score': 0.44}]
chr11	GH11I004458	4458495	4462149	0.85	[{'connected_gene': 'OR52K3P', 'score': 27.75}, {'connected_gene': 'OR52K1', 'score': 12.11}, {'connected_gene': 'OR52M1', 'score': 9.8}, {'connected_gene': 'TRIM21', 'score': 4.91}, {'connected_gene': 'OR52K2', 'score': 0.39}]
chr11	GH11I004433	4433942	4434267	0.23	[{'connected_gene': 'OR52P2P', 'score': 550.77}, {'connected_gene': 'TRIM21', 'score': 3.52}, {'connected_gene': 'GC11P004436', 'score': 0.77}]
chr11	GH11I004492	4492363	4492468	0.22	[{'connected_gene': 'OR52K2', 'score': 15.42}, {'connected_gene': 'OR51F1', 'score': 14.55}, {'connected_gene': 'OR52B4', 'score': 10.05}, {'connected_gene': 'OR51S1', 'score': 8.49}, {'connected_gene': 'OR51G2', 'score': 8.42}, {'connected_gene': 'OR51A4', 'score': 8.39}, {'connected_gene': 'OR52K1', 'score': 7.03}, {'connected_gene': 'C11orf40', 'score': 6.54}, {'connected_gene': 'OR52R1', 'score': 6.37}, {'connected_gene': 'OR51A7', 'score': 6.36}, {'connected_gene': 'OR51D1', 'score': 5.27}, {'connected_gene': 'OR52I1', 'score': 4.83}, {'connected_gene': 'OR52M1', 'score': 3.77}, {'connected_gene': 'TRIM21', 'score': 3.37}, {'connected_gene': 'OR51G1', 'score': 2.61}, {'connected_gene': 'OR51T1', 'score': 1.45}, {'connected_gene': 'OR52M2P', 'score': 0.34}]
chr11	GH11I004493	4492831	4493661	1.14	[{'connected_gene': 'OR52K2', 'score': 13.07}, {'connected_gene': 'OR52B4', 'score': 10.05}, {'connected_gene': 'TRIM21', 'score': 9.66}, {'connected_gene': 'OR51F1', 'score': 8.57}, {'connected_gene': 'OR52K1', 'score': 0.39}, {'connected_gene': 'OR52M2P', 'score': 0.34}]
chr11	GH11I003644	3644303	3645656	1.12	[{'connected_gene': 'ART1', 'score': 550.77}, {'connected_gene': 'TRIM21', 'score': 4.9}, {'connected_gene': 'ART5', 'score': 0.77}, {'connected_gene': 'GC11M003663', 'score': 0.37}, {'connected_gene': 'ENSG00000201279', 'score': 0.37}, {'connected_gene': 'GC11M003657', 'score': 0.09}, {'connected_gene': 'GC11M003656', 'score': 0.09}]