PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000519097	[[27109138, 27109640], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205060], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229685]]	[[27109588, 27109640], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205060], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]
ENST00000380036	[[27109146, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27180237, 27180366], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27230173]]	[[27109588, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27180237, 27180366], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]
ENST00000406359	[[27109413, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229744]]	[[27109588, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]
ENST00000519080	[[27109450, 27109640], [27169492, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27202883]]	[[27109588, 27109640], [27169492, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27202883]]
NM_001290078	[[27109138, 27109640], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205060], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27230176]]	[[27109588, 27109640], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205060], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]
NM_001290077	[[27109138, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27230176]]	[[27109588, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]
NM_000459	[[27109138, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27180237, 27180366], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27230176]]	[[27109588, 27109640], [27157828, 27158140], [27168492, 27168603], [27169474, 27169627], [27172613, 27172745], [27173219, 27173360], [27180237, 27180366], [27183456, 27183608], [27185482, 27185627], [27190526, 27190688], [27192486, 27192621], [27197312, 27197597], [27202817, 27203117], [27204908, 27205063], [27206579, 27206790], [27209118, 27209229], [27212704, 27212895], [27213481, 27213595], [27217685, 27217756], [27218774, 27218815], [27220046, 27220143], [27228203, 27228303], [27229155, 27229230]]

Promoter

Chrom	Start	End	Description
chr9	27109133	27109187	CAGE_peak_4_at_TEK_5end
chr9	27109199	27109248	CAGE_peak_3_at_TEK_5end
chr9	27109265	27109276	CAGE_peak_5_at_TEK_5end
chr9	27109392	27109435	CAGE_peak_1_at_TEK_5end
chr9	27109440	27109456	CAGE_peak_2_at_TEK_5end
chr9	27109469	27109474	CAGE_peak_6_at_TEK_5end
chr9	27109480	27109485	CAGE_peak_7_at_TEK_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I027053	27053092	27055000	0.66	[{'connected_gene': 'IFT74', 'score': 15.28}, {'connected_gene': 'LRRC19', 'score': 12.87}, {'connected_gene': 'TEK', 'score': 10.95}, {'connected_gene': 'EQTN', 'score': 9.58}, {'connected_gene': 'ENSG00000254396', 'score': 0.25}]
chr9	GH09I027108	27108747	27113012	1.9	[{'connected_gene': 'TEK', 'score': 552.06}, {'connected_gene': 'IFT74', 'score': 16.5}, {'connected_gene': 'LRRC19', 'score': 5.39}, {'connected_gene': 'PIR32540', 'score': 0.31}]
chr9	GH09I027085	27085860	27090666	0.69	[{'connected_gene': 'TEK', 'score': 12.42}, {'connected_gene': 'CAAP1', 'score': 11.27}, {'connected_gene': 'EQTN', 'score': 9.79}, {'connected_gene': 'IFT74', 'score': 8.81}, {'connected_gene': 'LRRC19', 'score': 7.77}, {'connected_gene': 'ENSG00000254396', 'score': 5.99}]
chr9	GH09I027149	27149856	27152623	0.83	[{'connected_gene': 'TEK', 'score': 6.78}, {'connected_gene': 'MOB3B', 'score': 4.81}, {'connected_gene': 'LRRC19', 'score': 4.58}, {'connected_gene': 'CAAP1', 'score': 4.31}, {'connected_gene': 'PIR32540', 'score': 0.39}, {'connected_gene': 'RNA5SP280', 'score': 0.25}]
chr9	GH09I027141	27141668	27143699	0.2	[{'connected_gene': 'TEK', 'score': 22.61}, {'connected_gene': 'LRRC19', 'score': 10.93}, {'connected_gene': 'PIR32540', 'score': 0.44}, {'connected_gene': 'RNA5SP280', 'score': 0.22}]
chr9	GH09I027123	27123781	27127233	0.96	[{'connected_gene': 'TEK', 'score': 10.98}, {'connected_gene': 'EQTN', 'score': 9.76}, {'connected_gene': 'LRRC19', 'score': 5.57}, {'connected_gene': 'ENSG00000254396', 'score': 5.25}, {'connected_gene': 'PIR32540', 'score': 0.39}]
chr9	GH09I027180	27180913	27182342	0.31	[{'connected_gene': 'TEK', 'score': 10.75}, {'connected_gene': 'EQTN', 'score': 10.3}, {'connected_gene': 'RNA5SP280', 'score': 0.37}, {'connected_gene': 'PIR32540', 'score': 0.26}]
chr9	GH09I027130	27130771	27131858	0.2	[{'connected_gene': 'TEK', 'score': 22.93}, {'connected_gene': 'EQTN', 'score': 9.76}, {'connected_gene': 'PIR32540', 'score': 0.44}]
chr9	GH09I027131	27131863	27132012	0.2	[{'connected_gene': 'TEK', 'score': 12.38}, {'connected_gene': 'EQTN', 'score': 9.76}, {'connected_gene': 'PIR32540', 'score': 0.77}]
chr9	GH09I027129	27129057	27130081	0.2	[{'connected_gene': 'TEK', 'score': 12.38}, {'connected_gene': 'EQTN', 'score': 9.76}, {'connected_gene': 'PIR32540', 'score': 0.44}]
chr9	GH09I027280	27280801	27281000	0.38	[{'connected_gene': 'TEK', 'score': 9.6}, {'connected_gene': 'LINC00032', 'score': 0.77}, {'connected_gene': 'RPL36AP34', 'score': 0.19}]
chr9	GH09I027281	27281201	27281400	0.31	[{'connected_gene': 'TEK', 'score': 9.6}, {'connected_gene': 'LINC00032', 'score': 0.77}, {'connected_gene': 'RPL36AP34', 'score': 0.19}]
chr9	GH09I027161	27161926	27162573	0.31	[{'connected_gene': 'TEK', 'score': 10.62}, {'connected_gene': 'PIR32540', 'score': 0.31}, {'connected_gene': 'RNA5SP280', 'score': 0.28}]
chr9	GH09I027154	27154530	27155776	1.08	[{'connected_gene': 'TEK', 'score': 5.26}, {'connected_gene': 'PIR32540', 'score': 0.37}, {'connected_gene': 'RNA5SP280', 'score': 0.26}]
chr9	GH09I027193	27193785	27195401	0.79	[{'connected_gene': 'TEK', 'score': 18.37}, {'connected_gene': 'RNA5SP280', 'score': 0.77}, {'connected_gene': 'PIR32540', 'score': 0.22}]
chr9	GH09I027226	27226863	27228110	0.52	[{'connected_gene': 'EQTN', 'score': 10.34}, {'connected_gene': 'TEK', 'score': 10.31}, {'connected_gene': 'RPL36AP34', 'score': 0.37}, {'connected_gene': 'LINC00032', 'score': 0.22}]
chr9	GH09I027117	27117143	27119853	1.33	[{'connected_gene': 'EQTN', 'score': 10.03}, {'connected_gene': 'LRRC19', 'score': 6.69}, {'connected_gene': 'TEK', 'score': 0.44}, {'connected_gene': 'PIR32540', 'score': 0.37}]
chr9	GH09I027183	27183903	27184052	0.52	[{'connected_gene': 'RNA5SP280', 'score': 0.39}, {'connected_gene': 'PIR32540', 'score': 0.25}, {'connected_gene': 'TEK', 'score': 0.19}]