PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000402696	[[133464799, 133465327], [133467255, 133467428], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497850]]	[[133465284, 133465327], [133467255, 133467428], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497464]]
ENST00000466911	[[133464883, 133465093], [133467255, 133467428], [133472438, 133472547], [133473338, 133473372]]	[[133467344, 133467428], [133472438, 133472547], [133473338, 133473372]]
ENST00000474287	[[133465171, 133465327], [133467255, 133467428], [133472438, 133472754]]	None
ENST00000460531	[[133465236, 133465327], [133472438, 133472924]]	None
ENST00000414694	[[133465236, 133465327], [133467255, 133467513], [133472438, 133472547], [133473338, 133473426]]	[[133465284, 133465327], [133467255, 133467513], [133472438, 133472485]]
ENST00000494430	[[133465236, 133465327], [133467255, 133467428], [133472438, 133472547], [133473346, 133473515], [133474206, 133474258]]	[[133465284, 133465327], [133467255, 133467428], [133472438, 133472547], [133473346, 133473384]]
ENST00000493011	[[133465236, 133465327], [133467255, 133467428], [133472438, 133472547], [133473338, 133473515], [133474206, 133474655]]	None
ENST00000482271	[[133465236, 133465327], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475767]]	[[133473394, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475767]]
ENST00000485977	[[133465236, 133465327], [133467255, 133467369], [133475775, 133475853], [133476612, 133476790], [133478018, 133478137]]	[[133465284, 133465327], [133467255, 133467369], [133475775, 133475853], [133476612, 133476686]]
ENST00000264998	[[133465236, 133465327], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497635]]	[[133473394, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497464]]
ENST00000475382	[[133465993, 133466128], [133467255, 133467428], [133472438, 133472547], [133473338, 133473507]]	None
ENST00000498622	[[133466983, 133467428], [133472438, 133472547], [133473338, 133473503]]	None
ENST00000461695	[[133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133493722, 133493783], [133494276, 133494461], [133495892, 133496082], [133497429, 133497626]]	[[133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133493722, 133493783], [133494276, 133494289]]
ENST00000462495	[[133486875, 133487008], [133489351, 133489800]]	None
ENST00000467842	[[133491595, 133494461], [133495892, 133497628]]	None
NM_001063	[[133464976, 133465327], [133467255, 133467428], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497850]]	[[133465284, 133465327], [133467255, 133467428], [133472438, 133472547], [133473338, 133473515], [133474206, 133474339], [133475125, 133475181], [133475674, 133475853], [133476612, 133476790], [133478018, 133478173], [133483025, 133483119], [133483718, 133483751], [133485121, 133485277], [133486872, 133487008], [133489351, 133489416], [133494276, 133494461], [133495892, 133496082], [133497429, 133497464]]

Promoter

Chrom	Start	End	Description
chr3	133465228	133465244	CAGE_peak_1_at_TF_5end
chr3	133467251	133467272	CAGE_peak_4_at_TF_5end
chr3	133467304	133467327	CAGE_peak_7_at_TF_5end
chr3	133473408	133473419	CAGE_peak_10_at_TF_5end
chr3	133473448	133473471	CAGE_peak_8_at_TF_5end
chr3	133483054	133483071	CAGE_peak_2_at_TF_5end
chr3	133486900	133486913	CAGE_peak_6_at_TF_5end
chr3	133486936	133486956	CAGE_peak_3_at_TF_5end
chr3	133493719	133493723	CAGE_peak_11_at_TF_5end
chr3	133494272	133494284	CAGE_peak_5_at_TF_5end
chr3	133494358	133494373	CAGE_peak_9_at_TF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I133752	133752508	133754809	0.85	[{'connected_gene': 'TF', 'score': 11.41}, {'connected_gene': 'SRPRB', 'score': 6.08}, {'connected_gene': 'LOC100421637', 'score': 0.44}, {'connected_gene': 'PIR42738', 'score': 0.34}, {'connected_gene': 'TFP1', 'score': 0.16}]
chr3	GH03I133746	133746344	133746403	1.43	[{'connected_gene': 'TF', 'score': 554.58}, {'connected_gene': 'LOC100421637', 'score': 0.39}, {'connected_gene': 'PIR42738', 'score': 0.39}, {'connected_gene': 'TFP1', 'score': 0.18}]
chr3	GH03I133747	133747877	133748857	1.04	[{'connected_gene': 'TF', 'score': 5.21}, {'connected_gene': 'LOC100421637', 'score': 0.39}, {'connected_gene': 'PIR42738', 'score': 0.37}, {'connected_gene': 'TFP1', 'score': 0.17}]
chr3	GH03I133763	133763970	133765313	0.69	[{'connected_gene': 'SRPRB', 'score': 21.39}, {'connected_gene': 'TF', 'score': 21.09}, {'connected_gene': 'C3orf36', 'score': 10.12}, {'connected_gene': 'LOC100421637', 'score': 0.77}]
chr3	GH03I133754	133754943	133756097	0.31	[{'connected_gene': 'SRPRB', 'score': 17.49}, {'connected_gene': 'TF', 'score': 10.58}, {'connected_gene': 'LOC100421637', 'score': 0.77}, {'connected_gene': 'PIR42738', 'score': 0.34}]
chr3	GH03I133663	133663601	133664199	0.98	[{'connected_gene': 'TOPBP1', 'score': 554.96}, {'connected_gene': 'TFP1', 'score': 550.77}, {'connected_gene': 'TF', 'score': 550.77}, {'connected_gene': 'RNU6-678P', 'score': 550.77}]
chr3	GH03I133660	133660049	133663028	1.97	[{'connected_gene': 'TOPBP1', 'score': 565.61}, {'connected_gene': 'TFP1', 'score': 558.73}, {'connected_gene': 'TF', 'score': 555.1}, {'connected_gene': 'GC03P133653', 'score': 0.44}]
chr3	GH03I133742	133742480	133743248	1.34	[{'connected_gene': 'RNU6-678P', 'score': 10.22}, {'connected_gene': 'TOPBP1', 'score': 10.21}, {'connected_gene': 'TF', 'score': 7.84}, {'connected_gene': 'PIR42738', 'score': 0.44}, {'connected_gene': 'LOC100421637', 'score': 0.37}, {'connected_gene': 'TFP1', 'score': 0.18}]
chr3	GH03I133609	133609574	133609833	0.31	[{'connected_gene': 'TFP1', 'score': 11.5}, {'connected_gene': 'TOPBP1', 'score': 11.5}, {'connected_gene': 'TF', 'score': 4.48}, {'connected_gene': 'CDV3', 'score': 0.28}, {'connected_gene': 'GC03P133653', 'score': 0.26}]