PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000540964	[[223282747, 223286377], [223305816, 223305981], [223308023, 223308206], [223310519, 223310629]]	[[223283796, 223286373]]
ENST00000366881	[[223283646, 223286377], [223305816, 223305981], [223308023, 223308206], [223310519, 223310605], [223314989, 223315105], [223316537, 223316624]]	[[223283796, 223286373]]
ENST00000342210	[[223283706, 223286377], [223305816, 223305981], [223307730, 223307824], [223308023, 223308098]]	[[223283796, 223286373]]
ENST00000407096	[[223286309, 223286377], [223305816, 223305981], [223308023, 223308206], [223316537, 223316580]]	[[223286309, 223286373]]
ENST00000484766	[[223307773, 223307824], [223308023, 223308206], [223310519, 223310605], [223314989, 223315105], [223316537, 223316588]]	None
ENST00000465726	[[223314723, 223315105], [223316537, 223316590]]	None
NM_003268	[[223282747, 223286377], [223305816, 223305981], [223308023, 223308206], [223310519, 223310605], [223314989, 223315105], [223316537, 223316624]]	[[223283796, 223286373]]

Promoter

Chrom	Start	End	Description
chr1	223308214	223308225	CAGE_peak_3_at_TLR5_5end
chr1	223316577	223316597	CAGE_peak_1_at_TLR5_5end
chr1	223316611	223316635	CAGE_peak_2_at_TLR5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I223109	223109071	223110465	1.02	[{'connected_gene': 'TAF1A', 'score': 15.14}, {'connected_gene': 'TLR5', 'score': 5.36}, {'connected_gene': 'PIR45603', 'score': 0.44}, {'connected_gene': 'LOC102724046', 'score': 0.44}]
chr1	GH01I223029	223029546	223032653	1.31	[{'connected_gene': 'DISP1', 'score': 5.75}, {'connected_gene': 'TLR5', 'score': 4.94}, {'connected_gene': 'LOC102724046', 'score': 0.19}, {'connected_gene': 'NDUFB1P2', 'score': 0.17}]
chr1	GH01I223122	223122623	223124110	1.02	[{'connected_gene': 'DISP1', 'score': 9.9}, {'connected_gene': 'LOC102724017', 'score': 9.9}, {'connected_gene': 'CAPN2', 'score': 9.81}, {'connected_gene': 'PIR45603', 'score': 0.44}, {'connected_gene': 'TLR5', 'score': 0.37}]
chr1	GH01I223018	223018128	223024528	1.23	[{'connected_gene': 'DISP1', 'score': 17.44}, {'connected_gene': 'ENSG00000272750', 'score': 11.41}, {'connected_gene': 'LOC102724017', 'score': 10.47}, {'connected_gene': 'TLR5', 'score': 4.86}, {'connected_gene': 'CAPN2', 'score': 4.15}, {'connected_gene': 'NDUFB1P2', 'score': 0.18}, {'connected_gene': 'LOC102724046', 'score': 0.18}]
chr1	GH01I223085	223085942	223090308	0.74	[{'connected_gene': 'CICP5', 'score': 11.88}, {'connected_gene': 'CICP13', 'score': 11.48}, {'connected_gene': 'ENSG00000272750', 'score': 11.43}, {'connected_gene': 'SUSD4', 'score': 4.54}, {'connected_gene': 'TLR5', 'score': 4.31}, {'connected_gene': 'LOC102724046', 'score': 0.37}, {'connected_gene': 'NDUFB1P2', 'score': 0.11}]
chr1	GH01I223028	223028831	223029312	0.31	[{'connected_gene': 'TLR5', 'score': 4.88}, {'connected_gene': 'DISP1', 'score': 4.57}, {'connected_gene': 'LOC102724046', 'score': 0.19}, {'connected_gene': 'NDUFB1P2', 'score': 0.18}]
chr1	GH01I223175	223175155	223176400	1.14	[{'connected_gene': 'TLR5', 'score': 16.74}, {'connected_gene': 'ENSG00000236846', 'score': 11.28}, {'connected_gene': 'GC01M223148', 'score': 0.44}, {'connected_gene': 'ENSG00000226601', 'score': 0.44}]
chr1	GH01I223176	223176482	223178400	1.29	[{'connected_gene': 'TLR5', 'score': 17.15}, {'connected_gene': 'ENSG00000236846', 'score': 11.09}, {'connected_gene': 'ENSG00000226601', 'score': 0.77}, {'connected_gene': 'GC01M223148', 'score': 0.44}]
chr1	GH01I223183	223183291	223183595	0.45	[{'connected_gene': 'TLR5', 'score': 2.79}, {'connected_gene': 'ENSG00000226601', 'score': 0.77}, {'connected_gene': 'GC01P223191', 'score': 0.44}]
chr1	GH01I223133	223133279	223135821	1.63	[{'connected_gene': 'TLR5', 'score': 550.44}, {'connected_gene': 'PIR45603', 'score': 0.37}]
chr1	GH01I223140	223140488	223141530	0.4	[{'connected_gene': 'TLR5', 'score': 0.77}, {'connected_gene': 'PIR45603', 'score': 0.34}]
chr1	GH01I223137	223137002	223138018	0.9	[{'connected_gene': 'TLR5', 'score': 0.44}, {'connected_gene': 'PIR45603', 'score': 0.37}]
chr1	GH01I222653	222653114	222655957	1.49	[{'connected_gene': 'BROX', 'score': 37.62}, {'connected_gene': 'ENSG00000272750', 'score': 27.72}, {'connected_gene': 'AIDA', 'score': 11.92}, {'connected_gene': 'TLR5', 'score': 1.17}, {'connected_gene': 'ENSG00000229399', 'score': 0.39}, {'connected_gene': 'MIA3', 'score': 0.28}]
chr1	GH01I223102	223102976	223103682	1.03	[{'connected_gene': 'LOC102724046', 'score': 550.77}, {'connected_gene': 'TLR5', 'score': 10.46}, {'connected_gene': 'ENSG00000236846', 'score': 10.44}, {'connected_gene': 'DISP1', 'score': 10.14}, {'connected_gene': 'LOC102724017', 'score': 10.14}, {'connected_gene': 'PIR45603', 'score': 0.39}]
chr1	GH01I223129	223129198	223129940	1.04	[{'connected_gene': 'LOC102724017', 'score': 9.9}, {'connected_gene': 'DISP1', 'score': 9.9}, {'connected_gene': 'CAPN2', 'score': 9.81}, {'connected_gene': 'PIR45603', 'score': 0.39}, {'connected_gene': 'TLR5', 'score': 0.39}]
chr1	GH01I223189	223189659	223191088	1.26	[{'connected_gene': 'GC01P223191', 'score': 550.77}, {'connected_gene': 'TLR5', 'score': 12.58}, {'connected_gene': 'CICP5', 'score': 11.88}, {'connected_gene': 'CICP13', 'score': 11.48}, {'connected_gene': 'ENSG00000272750', 'score': 11.42}, {'connected_gene': 'ENSG00000236846', 'score': 10.97}, {'connected_gene': 'ENSG00000226601', 'score': 0.44}]
chr1	GH01I223142	223142130	223144578	2.05	[{'connected_gene': 'ENSG00000236846', 'score': 550.77}, {'connected_gene': 'TLR5', 'score': 550.77}, {'connected_gene': 'CICP13', 'score': 28.77}, {'connected_gene': 'CICP5', 'score': 27.55}, {'connected_gene': 'ENSG00000272750', 'score': 23.71}, {'connected_gene': 'TAF1A', 'score': 18.79}, {'connected_gene': 'LOC100287497', 'score': 11.12}, {'connected_gene': 'FBXO28', 'score': 10.53}]
chr1	GH01I223228	223228954	223232303	0.79	[{'connected_gene': 'ENSG00000236846', 'score': 11.51}, {'connected_gene': 'TLR5', 'score': 11.51}, {'connected_gene': 'GC01P223191', 'score': 0.28}, {'connected_gene': 'PIR51913', 'score': 0.21}, {'connected_gene': 'SUSD4', 'score': 0.12}]
chr1	GH01I223179	223179879	223180202	0.43	[{'connected_gene': 'ENSG00000226601', 'score': 550.77}, {'connected_gene': 'TLR5', 'score': 13.76}, {'connected_gene': 'ENSG00000236846', 'score': 11.17}, {'connected_gene': 'GC01M223148', 'score': 0.44}]
chr1	GH01I223207	223207237	223209336	0.59	[{'connected_gene': 'ENSG00000236846', 'score': 10.77}, {'connected_gene': 'TLR5', 'score': 10.77}, {'connected_gene': 'GC01P223191', 'score': 0.37}, {'connected_gene': 'PIR51913', 'score': 0.18}]
chr1	GH01I223119	223119459	223119648	0.57	[{'connected_gene': 'PIR45603', 'score': 550.77}, {'connected_gene': 'TLR5', 'score': 0.34}]
chr1	GH01I223180	223180401	223181763	0.92	[{'connected_gene': 'ENSG00000226601', 'score': 550.77}, {'connected_gene': 'ENSG00000236846', 'score': 11.17}, {'connected_gene': 'TLR5', 'score': 11.17}, {'connected_gene': 'GC01M223148', 'score': 0.39}]
chr1	GH01I223114	223114560	223115668	0.66	[{'connected_gene': 'PIR45603', 'score': 0.77}, {'connected_gene': 'LOC102724046', 'score': 0.39}, {'connected_gene': 'TLR5', 'score': 0.31}]