PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000462410	[[211499956, 211500015], [211526580, 211526799], [211527751, 211527809], [211529708, 211534121], [211534429, 211534504], [211538717, 211538851]]	None
ENST00000336184	[[211499956, 211500015], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548282]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
ENST00000488428	[[211500039, 211500231], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533223, 211533418], [211534043, 211534121], [211534429, 211534490]]	None
ENST00000427925	[[211500168, 211500231], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546246]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
ENST00000494355	[[211500174, 211500231], [211526580, 211526960]]	None
ENST00000261464	[[211500178, 211500231], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548288]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
ENST00000367004	[[211519705, 211519764], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546137]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
ENST00000473385	[[211542270, 211542934], [211544643, 211544812], [211545469, 211548127]]	None
NM_004619	[[211499956, 211500015], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548288]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
NM_001033910	[[211500147, 211500231], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548288]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
NM_001319207	[[211500147, 211500231], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533220, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548288]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533220, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]
NM_145759	[[211519705, 211519764], [211526580, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211548288]]	[[211526581, 211526799], [211527751, 211527809], [211529708, 211529810], [211533253, 211533418], [211534043, 211534121], [211534429, 211534504], [211538717, 211538810], [211542793, 211542934], [211544643, 211544812], [211545469, 211546044]]

Promoter

Chrom	Start	End	Description
chr1	211499971	211499982	CAGE_peak_3_at_TRAF5_5end
chr1	211500017	211500028	CAGE_peak_4_at_TRAF5_5end
chr1	211500129	211500189	CAGE_peak_1_at_TRAF5_5end
chr1	211500190	211500204	CAGE_peak_2_at_TRAF5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I211914	211914910	211921650	1.35	[{'connected_gene': 'LPGAT1', 'score': 20.39}, {'connected_gene': 'LOC102723727', 'score': 19.38}, {'connected_gene': 'SNORA16B', 'score': 15.95}, {'connected_gene': 'TRAF5', 'score': 11.08}, {'connected_gene': 'ENSG00000212187', 'score': 10.39}, {'connected_gene': 'ENSG00000229832', 'score': 9.68}, {'connected_gene': 'INTS7', 'score': 4.2}, {'connected_gene': 'ENSG00000233626', 'score': 0.37}, {'connected_gene': 'PIR53279', 'score': 0.25}]
chr1	GH01I211365	211365265	211369720	0.43	[{'connected_gene': 'LINC00467', 'score': 17.49}, {'connected_gene': 'TRAF5', 'score': 12.41}, {'connected_gene': 'RD3', 'score': 11.33}, {'connected_gene': 'ENSG00000223649', 'score': 11.33}]
chr1	GH01I211381	211381714	211384093	1.77	[{'connected_gene': 'LINC00467', 'score': 562.46}, {'connected_gene': 'TRAF5', 'score': 12.63}, {'connected_gene': 'SNX25P1', 'score': 0.29}]
chr1	GH01I211372	211372842	211375927	0.77	[{'connected_gene': 'LINC00467', 'score': 9.58}, {'connected_gene': 'TRAF5', 'score': 0.25}]
chr1	GH01I211376	211376798	211379201	1.14	[{'connected_gene': 'LINC00467', 'score': 9.73}, {'connected_gene': 'TRAF5', 'score': 0.23}]
chr1	GH01I211513	211513754	211518166	1.71	[{'connected_gene': 'SLC30A1', 'score': 17.38}, {'connected_gene': 'TRAF5', 'score': 12.18}, {'connected_gene': 'RCOR3', 'score': 11.17}, {'connected_gene': 'LINC00467', 'score': 6.43}, {'connected_gene': 'RD3', 'score': 0.34}, {'connected_gene': 'GC01M211578', 'score': 0.21}]
chr1	GH01I211326	211326170	211330695	2.43	[{'connected_gene': 'TRAF5', 'score': 558.12}, {'connected_gene': 'LINC00467', 'score': 17.62}, {'connected_gene': 'RCOR3', 'score': 11.72}, {'connected_gene': 'PPP2R5A', 'score': 4.75}]
chr1	GH01I211348	211348881	211350311	0.31	[{'connected_gene': 'TRAF5', 'score': 12.96}, {'connected_gene': 'LINC00467', 'score': 9.08}, {'connected_gene': 'RCOR3', 'score': 4.9}]
chr1	GH01I211358	211358834	211361831	0.43	[{'connected_gene': 'TRAF5', 'score': 12.53}, {'connected_gene': 'LINC00467', 'score': 6.9}, {'connected_gene': 'RCOR3', 'score': 4.89}]
chr1	GH01I211331	211331419	211331568	0.74	[{'connected_gene': 'TRAF5', 'score': 0.77}, {'connected_gene': 'LINC00467', 'score': 0.23}]
chr1	GH01I211338	211338892	211340300	0.66	[{'connected_gene': 'TRAF5', 'score': 0.39}, {'connected_gene': 'LINC00467', 'score': 0.26}]
chr1	GH01I211345	211345621	211346028	0.76	[{'connected_gene': 'TRAF5', 'score': 0.37}, {'connected_gene': 'LINC00467', 'score': 0.28}]
chr1	GH01I211340	211340992	211341401	0.51	[{'connected_gene': 'TRAF5', 'score': 0.39}, {'connected_gene': 'LINC00467', 'score': 0.26}]
chr1	GH01I211351	211351692	211354600	1.17	[{'connected_gene': 'TRAF5', 'score': 12.94}, {'connected_gene': 'RCOR3', 'score': 4.9}, {'connected_gene': 'LINC00467', 'score': 0.31}]
chr1	GH01I211420	211420296	211420360	0.53	[{'connected_gene': 'TRAF5', 'score': 2.4}, {'connected_gene': 'SNX25P1', 'score': 0.77}, {'connected_gene': 'GC01M211424', 'score': 0.77}, {'connected_gene': 'LINC00467', 'score': 0.28}]
chr1	GH01I211323	211323401	211323728	1.14	[{'connected_gene': 'TRAF5', 'score': 0.77}, {'connected_gene': 'GC01M211317', 'score': 0.44}]
chr1	GH01I211371	211371539	211371688	0.77	[{'connected_gene': 'RCOR3', 'score': 14.04}, {'connected_gene': 'LINC00467', 'score': 0.39}, {'connected_gene': 'TRAF5', 'score': 0.25}]
chr1	GH01I211332	211332990	211334382	0.76	[{'connected_gene': 'RCOR3', 'score': 12.15}, {'connected_gene': 'LINC00467', 'score': 5.17}, {'connected_gene': 'TRAF5', 'score': 0.44}]
chr1	GH01I211334	211334637	211338074	1.06	[{'connected_gene': 'RD3', 'score': 11.28}, {'connected_gene': 'ENSG00000223649', 'score': 11.28}, {'connected_gene': 'LINC00467', 'score': 7.32}, {'connected_gene': 'TRAF5', 'score': 0.44}]
chr1	GH01I211344	211344171	211344634	1.18	[{'connected_gene': 'RD3', 'score': 18.01}, {'connected_gene': 'TRAF5', 'score': 4.98}, {'connected_gene': 'LINC00467', 'score': 0.28}]
chr1	GH01I211573	211573781	211582600	2.71	[{'connected_gene': 'GC01M211578', 'score': 550.77}, {'connected_gene': 'SLC30A1', 'score': 550.77}, {'connected_gene': 'LINC00467', 'score': 5.87}, {'connected_gene': 'TRAF5', 'score': 2.87}, {'connected_gene': 'RD3', 'score': 0.17}]