PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000526713	[[101375435, 101375529], [101743028, 101743293]]	None
ENST00000344327	[[101322294, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454659]]	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454234]]
ENST00000532133	[[101323602, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454237]]	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454234]]
ENST00000348423	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101374754, 101375529], [101454064, 101454234]]	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101374754, 101375529], [101454064, 101454234]]
ENST00000360497	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101362286, 101362469], [101374754, 101375529], [101454064, 101454234]]	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101362286, 101362469], [101374754, 101375529], [101454064, 101454234]]
ENST00000532184	[[101324371, 101324456], [101325748, 101326308]]	None
ENST00000527240	[[101362111, 101362469], [101374754, 101374821]]	None
NM_004621	[[101322294, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454659]]	[[101323685, 101323837], [101324380, 101324456], [101325748, 101325832], [101340157, 101340232], [101341913, 101342117], [101342867, 101343063], [101344239, 101344504], [101347031, 101347265], [101353679, 101353896], [101359667, 101359832], [101362286, 101362469], [101374754, 101375529], [101454064, 101454234]]

Promoter

Chrom	Start	End	Description
chr11	101454246	101454255	CAGE_peak_11_at_TRPC6_5end
chr11	101454548	101454609	CAGE_peak_1_at_TRPC6_5end
chr11	101454633	101454644	CAGE_peak_5_at_TRPC6_5end
chr11	101454658	101454671	CAGE_peak_7_at_TRPC6_5end
chr11	101454679	101454715	CAGE_peak_2_at_TRPC6_5end
chr11	101454731	101454743	CAGE_peak_3_at_TRPC6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I102014	102014830	102014882	0.38	[{'connected_gene': 'TRPC6', 'score': 10.9}, {'connected_gene': 'GC11P102001', 'score': 0.39}, {'connected_gene': 'C11orf70', 'score': 0.29}]
chr11	GH11I102012	102012990	102013199	0.38	[{'connected_gene': 'TRPC6', 'score': 10.9}, {'connected_gene': 'GC11P102001', 'score': 0.39}, {'connected_gene': 'C11orf70', 'score': 0.29}]
chr11	GH11I102010	102010061	102012905	1.22	[{'connected_gene': 'TRPC6', 'score': 10.9}, {'connected_gene': 'CEP126', 'score': 5.27}, {'connected_gene': 'ANGPTL5', 'score': 5.24}, {'connected_gene': 'GC11P102001', 'score': 0.39}, {'connected_gene': 'C11orf70', 'score': 0.28}]
chr11	GH11I101909	101909876	101909879	0.31	[{'connected_gene': 'TRPC6', 'score': 10.96}, {'connected_gene': 'CEP126', 'score': 0.44}, {'connected_gene': 'ANGPTL5', 'score': 0.44}]
chr11	GH11I101870	101870436	101871267	0.66	[{'connected_gene': 'TRPC6', 'score': 550.77}, {'connected_gene': 'CEP126', 'score': 7.45}, {'connected_gene': 'PIR36183', 'score': 0.39}]
chr11	GH11I102006	102006534	102008379	1.08	[{'connected_gene': 'TRPC6', 'score': 11.33}, {'connected_gene': 'ANGPTL5', 'score': 5.68}, {'connected_gene': 'GC11P102001', 'score': 0.44}, {'connected_gene': 'C11orf70', 'score': 0.28}]
chr11	GH11I101517	101516106	101516114	0.24	[{'connected_gene': 'TRPC6', 'score': 5.72}, {'connected_gene': 'MIR3920', 'score': 0.77}, {'connected_gene': 'LOC105369458', 'score': 0.08}]
chr11	GH11I101720	101720348	101721976	0.2	[{'connected_gene': 'TRPC6', 'score': 4.31}, {'connected_gene': 'LOC100129471', 'score': 0.25}, {'connected_gene': 'LOC100127938', 'score': 0.12}]
chr11	GH11I101567	101567150	101567299	0.31	[{'connected_gene': 'TRPC6', 'score': 5.56}, {'connected_gene': 'LOC100127938', 'score': 0.37}, {'connected_gene': 'MIR3920', 'score': 0.25}]
chr11	GH11I101553	101553403	101555579	0.49	[{'connected_gene': 'TRPC6', 'score': 5.13}, {'connected_gene': 'LOC100127938', 'score': 0.31}, {'connected_gene': 'MIR3920', 'score': 0.29}]
chr11	GH11I101582	101582355	101584619	1.43	[{'connected_gene': 'TRPC6', 'score': 556.94}, {'connected_gene': 'LOC100127938', 'score': 550.77}, {'connected_gene': 'MIR3920', 'score': 0.21}]
chr11	GH11I101617	101617593	101619608	0.2	[{'connected_gene': 'TRPC6', 'score': 6.79}, {'connected_gene': 'LOC100127938', 'score': 0.29}, {'connected_gene': 'LOC100129471', 'score': 0.1}]
chr11	GH11I101861	101861969	101865134	0.92	[{'connected_gene': 'CEP126', 'score': 8.32}, {'connected_gene': 'PIR36183', 'score': 0.77}, {'connected_gene': 'TRPC6', 'score': 0.44}]
chr11	GH11I101865	101865761	101868454	0.87	[{'connected_gene': 'CEP126', 'score': 8.13}, {'connected_gene': 'PIR36183', 'score': 0.44}, {'connected_gene': 'TRPC6', 'score': 0.44}]
chr11	GH11I101816	101816944	101818326	0.2	[{'connected_gene': 'CEP126', 'score': 8.36}, {'connected_gene': 'ANGPTL5', 'score': 5.0}, {'connected_gene': 'PIR35553', 'score': 0.37}, {'connected_gene': 'PIR36183', 'score': 0.26}, {'connected_gene': 'TRPC6', 'score': 0.23}]
chr11	GH11I101911	101911762	101916745	2.22	[{'connected_gene': 'ANGPTL5', 'score': 559.81}, {'connected_gene': 'CEP126', 'score': 550.77}, {'connected_gene': 'TRPC6', 'score': 10.94}]
chr11	GH11I101516	101516507	101516839	0.31	[{'connected_gene': 'MIR3920', 'score': 0.77}, {'connected_gene': 'LOC105369458', 'score': 0.08}, {'connected_gene': 'TRPC6', 'score': 0.05}]
chr11	GH11I101487	101487298	101488496	0.31	[{'connected_gene': 'MIR3920', 'score': 0.29}, {'connected_gene': 'LOC105369458', 'score': 0.1}, {'connected_gene': 'TRPC6', 'score': 0.05}]
chr11	GH11I101471	101471170	101471319	0.2	[{'connected_gene': 'MIR3920', 'score': 0.25}, {'connected_gene': 'LOC105369458', 'score': 0.1}, {'connected_gene': 'TRPC6', 'score': 0.05}]
chr11	GH11I101478	101478576	101479300	0.38	[{'connected_gene': 'MIR3920', 'score': 0.26}, {'connected_gene': 'LOC105369458', 'score': 0.1}, {'connected_gene': 'TRPC6', 'score': 0.05}]
chr11	GH11I101521	101521562	101522424	0.2	[{'connected_gene': 'MIR3920', 'score': 0.77}, {'connected_gene': 'LOC100127938', 'score': 0.21}, {'connected_gene': 'TRPC6', 'score': 0.05}]
chr11	GH11I101748	101748601	101749892	0.51	[{'connected_gene': 'LOC100129471', 'score': 0.34}, {'connected_gene': 'TRPC6', 'score': 0.13}, {'connected_gene': 'LOC100127938', 'score': 0.1}]
chr11	GH11I101775	101775130	101775279	0.43	[{'connected_gene': 'LOC100129471', 'score': 0.44}, {'connected_gene': 'PIR35553', 'score': 0.34}, {'connected_gene': 'TRPC6', 'score': 0.15}]
chr11	GH11I101715	101715450	101715519	0.2	[{'connected_gene': 'LOC100129471', 'score': 0.23}, {'connected_gene': 'LOC100127938', 'score': 0.12}, {'connected_gene': 'TRPC6', 'score': 0.1}]
chr11	GH11I101706	101706650	101706799	0.38	[{'connected_gene': 'LOC100129471', 'score': 0.21}, {'connected_gene': 'LOC100127938', 'score': 0.13}, {'connected_gene': 'TRPC6', 'score': 0.1}]
chr11	GH11I101718	101718550	101718699	0.38	[{'connected_gene': 'LOC100129471', 'score': 0.23}, {'connected_gene': 'LOC100127938', 'score': 0.12}, {'connected_gene': 'TRPC6', 'score': 0.1}]
chr11	GH11I101686	101686610	101686879	0.56	[{'connected_gene': 'LOC100129471', 'score': 0.18}, {'connected_gene': 'LOC100127938', 'score': 0.15}, {'connected_gene': 'TRPC6', 'score': 0.09}]
chr11	GH11I101860	101860830	101861039	0.59	[{'connected_gene': 'PIR36183', 'score': 550.77}, {'connected_gene': 'CEP126', 'score': 11.93}, {'connected_gene': 'TRPC6', 'score': 0.39}]