PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000425792	[[23244510, 23244753], [23250182, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23631713]]	[[23250190, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23631322]]
ENST00000452894	[[23244590, 23244753], [23250182, 23250366], [23258752, 23258803], [23365005, 23365077], [23541098, 23541231], [23574044, 23574106]]	[[23250190, 23250366], [23258752, 23258803], [23365005, 23365077], [23541098, 23541231], [23574044, 23574106]]
ENST00000335798	[[23244652, 23244753], [23250182, 23250366], [23258752, 23258803], [23574044, 23574192], [23631224, 23632070]]	[[23250190, 23250366], [23258752, 23258803], [23574044, 23574096]]
ENST00000396703	[[23244783, 23244955], [23250182, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23633284]]	[[23250190, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23631322]]
ENST00000427371	[[23244820, 23244955], [23250182, 23250366], [23258752, 23258803], [23312440, 23312649]]	[[23250190, 23250366], [23258752, 23258803], [23312440, 23312483]]
NM_152653	[[23244783, 23244955], [23250182, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23632296]]	[[23250190, 23250366], [23258752, 23258803], [23541098, 23541231], [23574044, 23574192], [23631224, 23631322]]

Promoter

Chrom	Start	End	Description
chr3	23244513	23244528	CAGE_peak_4_at_UBE2E2_5end
chr3	23244579	23244630	CAGE_peak_1_at_UBE2E2_5end
chr3	23244641	23244683	CAGE_peak_2_at_UBE2E2_5end
chr3	23244780	23244837	CAGE_peak_3_at_UBE2E2_5end
chr3	23244863	23244880	CAGE_peak_5_at_UBE2E2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I023440	23440801	23441000	0.2	[{'connected_gene': 'UBE2E2', 'score': 5.47}, {'connected_gene': 'LOC105376991', 'score': 0.34}, {'connected_gene': 'GC03M023442', 'score': 0.31}]
chr3	GH03I023202	23202294	23204801	1.93	[{'connected_gene': 'UBE2E2', 'score': 557.12}, {'connected_gene': 'UBE2E2-AS1', 'score': 550.77}, {'connected_gene': 'HMGB1P5', 'score': 5.01}, {'connected_gene': 'PIR45638', 'score': 0.2}]
chr3	GH03I023159	23159599	23160650	1.12	[{'connected_gene': 'UBE2E2', 'score': 17.88}, {'connected_gene': 'UBE2E2-AS1', 'score': 11.64}, {'connected_gene': 'PIR39843', 'score': 0.39}, {'connected_gene': 'RPL24P7', 'score': 0.31}]
chr3	GH03I023162	23162970	23163119	0.43	[{'connected_gene': 'UBE2E2', 'score': 11.01}, {'connected_gene': 'UBE2E2-AS1', 'score': 11.0}, {'connected_gene': 'PIR39843', 'score': 0.44}, {'connected_gene': 'RPL24P7', 'score': 0.31}]
chr3	GH03I023254	23254601	23255000	0.43	[{'connected_gene': 'UBE2E2', 'score': 5.03}, {'connected_gene': 'UBE2E2-AS1', 'score': 4.42}, {'connected_gene': 'PIR45638', 'score': 0.37}, {'connected_gene': 'GC03M023245', 'score': 0.34}]
chr3	GH03I023074	23074606	23076298	0.43	[{'connected_gene': 'UBE2E2', 'score': 8.48}, {'connected_gene': 'RPL24P7', 'score': 0.22}, {'connected_gene': 'SALL4P5', 'score': 0.17}]
chr3	GH03I023113	23113896	23114159	0.98	[{'connected_gene': 'UBE2E2', 'score': 2.4}, {'connected_gene': 'RPL24P7', 'score': 0.34}, {'connected_gene': 'SALL4P5', 'score': 0.13}]
chr3	GH03I023070	23070810	23072800	0.69	[{'connected_gene': 'UBE2E2', 'score': 6.98}, {'connected_gene': 'RPL24P7', 'score': 0.21}, {'connected_gene': 'SALL4P5', 'score': 0.18}]
chr3	GH03I023128	23128891	23130599	0.68	[{'connected_gene': 'UBE2E2', 'score': 6.12}, {'connected_gene': 'RPL24P7', 'score': 0.77}, {'connected_gene': 'SALL4P5', 'score': 0.12}]
chr3	GH03I022980	22980352	22981775	0.52	[{'connected_gene': 'UBE2E2', 'score': 9.63}, {'connected_gene': 'SALL4P5', 'score': 0.44}, {'connected_gene': 'RANP7', 'score': 0.18}]
chr3	GH03I023041	23041711	23043413	0.2	[{'connected_gene': 'UBE2E2', 'score': 9.29}, {'connected_gene': 'SALL4P5', 'score': 0.23}, {'connected_gene': 'RPL24P7', 'score': 0.16}]
chr3	GH03I023035	23035766	23037692	0.87	[{'connected_gene': 'UBE2E2', 'score': 9.74}, {'connected_gene': 'SALL4P5', 'score': 0.25}, {'connected_gene': 'RPL24P7', 'score': 0.15}]
chr3	GH03I023567	23567373	23568637	0.72	[{'connected_gene': 'UBE2E2', 'score': 7.04}, {'connected_gene': 'PIR46278', 'score': 0.26}, {'connected_gene': 'GC03P023480', 'score': 0.17}]
chr3	GH03I023566	23566747	23567088	0.2	[{'connected_gene': 'UBE2E2', 'score': 5.2}, {'connected_gene': 'PIR46278', 'score': 0.26}, {'connected_gene': 'GC03P023480', 'score': 0.17}]
chr3	GH03I023312	23312423	23314046	0.2	[{'connected_gene': 'UBE2E2', 'score': 6.63}, {'connected_gene': 'GC03M023245', 'score': 0.28}, {'connected_gene': 'ENSG00000228171', 'score': 0.18}]
chr3	GH03I023599	23599497	23601996	0.67	[{'connected_gene': 'UBE2E2', 'score': 7.47}, {'connected_gene': 'PIR46278', 'score': 0.44}, {'connected_gene': 'GC03P023480', 'score': 0.13}]
chr3	GH03I023441	23440401	23440600	0.31	[{'connected_gene': 'LOC105376991', 'score': 0.34}, {'connected_gene': 'GC03M023442', 'score': 0.31}, {'connected_gene': 'UBE2E2', 'score': 0.07}]
chr3	GH03I023580	23580490	23580659	0.7	[{'connected_gene': 'UBE2E1-AS1', 'score': 9.97}, {'connected_gene': 'UBE2E1', 'score': 9.97}, {'connected_gene': 'PIR46278', 'score': 0.31}, {'connected_gene': 'GC03P023480', 'score': 0.15}, {'connected_gene': 'UBE2E2', 'score': 0.05}]
chr3	GH03I023164	23164987	23165008	0.26	[{'connected_gene': 'UBE2E2-AS1', 'score': 11.49}, {'connected_gene': 'UBE2E2', 'score': 11.49}, {'connected_gene': 'PIR39843', 'score': 0.44}, {'connected_gene': 'RPL24P7', 'score': 0.29}]
chr3	GH03I023263	23263484	23265311	0.43	[{'connected_gene': 'UBE2E2-AS1', 'score': 15.84}, {'connected_gene': 'UBE2E2', 'score': 11.07}, {'connected_gene': 'PIR45638', 'score': 0.44}, {'connected_gene': 'GC03M023245', 'score': 0.39}]
chr3	GH03I023220	23220801	23222200	0.63	[{'connected_gene': 'UBE2E2-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E2', 'score': 0.37}, {'connected_gene': 'PIR45638', 'score': 0.25}]
chr3	GH03I023219	23219092	23220036	0.69	[{'connected_gene': 'UBE2E2-AS1', 'score': 0.37}, {'connected_gene': 'UBE2E2', 'score': 0.37}, {'connected_gene': 'PIR45638', 'score': 0.23}]
chr3	GH03I022713	22713996	22714179	0.85	[{'connected_gene': 'ENSG00000234723', 'score': 16.1}, {'connected_gene': 'UBE2E2', 'score': 1.29}, {'connected_gene': 'GC03P022706', 'score': 0.44}, {'connected_gene': 'LOC100421669', 'score': 0.15}]
chr3	GH03I023389	23389772	23389988	0.35	[{'connected_gene': 'ENSG00000228171', 'score': 550.77}, {'connected_gene': 'GC03M023245', 'score': 0.14}, {'connected_gene': 'UBE2E2', 'score': 0.09}]
chr3	GH03I023348	23348344	23348707	0.25	[{'connected_gene': 'ENSG00000228171', 'score': 0.26}, {'connected_gene': 'GC03M023245', 'score': 0.19}, {'connected_gene': 'UBE2E2', 'score': 0.11}]
chr3	GH03I023390	23389210	23389359	0.43	[{'connected_gene': 'ENSG00000228171', 'score': 550.77}, {'connected_gene': 'GC03M023245', 'score': 0.14}, {'connected_gene': 'UBE2E2', 'score': 0.09}]
chr3	GH03I023324	23324390	23325809	0.88	[{'connected_gene': 'GC03M023245', 'score': 0.25}, {'connected_gene': 'ENSG00000228171', 'score': 0.21}, {'connected_gene': 'UBE2E2', 'score': 0.13}]
chr3	GH03I023590	23590659	23590759	0.65	[{'connected_gene': 'PIR46278', 'score': 0.37}, {'connected_gene': 'GC03P023480', 'score': 0.14}, {'connected_gene': 'UBE2E2', 'score': 0.05}]
chr3	GH03I023341	23341201	23342000	0.43	[{'connected_gene': 'ENSG00000228171', 'score': 0.25}, {'connected_gene': 'GC03M023245', 'score': 0.21}, {'connected_gene': 'UBE2E2', 'score': 0.12}]
chr3	GH03I023501	23501590	23501739	0.49	[{'connected_gene': 'GC03P023480', 'score': 0.34}, {'connected_gene': 'PIR46278', 'score': 0.14}, {'connected_gene': 'UBE2E2', 'score': 0.06}]