PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371146	[[62901974, 62902233], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62917473]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62916652]]
ENST00000339950	[[62902325, 62903071], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62917475]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62916652]]
ENST00000452143	[[62901967, 62902233], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908991]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908991]]
ENST00000442679	[[62901968, 62902138], [62905469, 62905708], [62907158, 62907251]]	[[62905538, 62905708], [62907158, 62907251]]
NM_001017416	[[62901974, 62902138], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62917475]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62916652]]
NM_001017415	[[62901974, 62902233], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62917475]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62916652]]
NM_003368	[[62902382, 62903071], [62905469, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62917475]]	[[62905538, 62905708], [62907158, 62907279], [62907865, 62907970], [62908829, 62908990], [62910408, 62911100], [62913011, 62913182], [62914135, 62914337], [62915916, 62916652]]

Promoter

Chrom	Start	End	Description
chr1	62902035	62902075	CAGE_peak_4_at_USP1_5end
chr1	62902308	62902335	CAGE_peak_9_at_USP1_5end
chr1	62902336	62902387	CAGE_peak_2_at_USP1_5end
chr1	62902414	62902438	CAGE_peak_5_at_USP1_5end
chr1	62902537	62902560	CAGE_peak_6_at_USP1_5end
chr1	62902651	62902673	CAGE_peak_3_at_USP1_5end
chr1	62902687	62902806	CAGE_peak_1_at_USP1_5end
chr1	62902937	62902960	CAGE_peak_11_at_USP1_5end
chr1	62903005	62903020	CAGE_peak_23_at_USP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I062485	62485001	62485200	0.43	[{'connected_gene': 'DOCK7', 'score': 16.54}, {'connected_gene': 'ATG4C', 'score': 10.36}, {'connected_gene': 'ENSG00000270549', 'score': 0.25}, {'connected_gene': 'USP1', 'score': 0.25}]
chr1	GH01I062483	62483277	62483645	0.22	[{'connected_gene': 'DOCK7', 'score': 18.56}, {'connected_gene': 'ATG4C', 'score': 12.35}, {'connected_gene': 'KANK4', 'score': 1.85}, {'connected_gene': 'USP1', 'score': 1.54}, {'connected_gene': 'ENSG00000270549', 'score': 0.25}]
chr1	GH01I062462	62462639	62462937	0.56	[{'connected_gene': 'DOCK7', 'score': 15.85}, {'connected_gene': 'USP1', 'score': 10.73}, {'connected_gene': 'KANK4', 'score': 5.59}, {'connected_gene': 'ATG4C', 'score': 1.68}, {'connected_gene': 'ENSG00000270549', 'score': 0.2}]
chr1	GH01I062440	62440435	62441581	0.38	[{'connected_gene': 'DOCK7', 'score': 18.8}, {'connected_gene': 'USP1', 'score': 0.77}, {'connected_gene': 'ENSG00000270549', 'score': 0.17}]
chr1	GH01I062514	62514801	62515400	0.49	[{'connected_gene': 'DOCK7', 'score': 17.0}, {'connected_gene': 'ANGPTL3', 'score': 11.22}, {'connected_gene': 'ENSG00000270549', 'score': 0.37}, {'connected_gene': 'USP1', 'score': 0.18}]
chr1	GH01I062686	62686685	62692108	2.25	[{'connected_gene': 'DOCK7', 'score': 570.46}, {'connected_gene': 'ENSG00000235545', 'score': 550.77}, {'connected_gene': 'ITGB3BP', 'score': 14.4}, {'connected_gene': 'USP1', 'score': 13.98}, {'connected_gene': 'ATG4C', 'score': 10.48}]
chr1	GH01I061723	61723895	61726328	2.09	[{'connected_gene': 'TM2D1', 'score': 550.77}, {'connected_gene': 'ENSG00000270742', 'score': 22.03}, {'connected_gene': 'USP1', 'score': 15.93}, {'connected_gene': 'GC01M061668', 'score': 0.22}]
chr1	GH01I062435	62435284	62440261	2.51	[{'connected_gene': 'USP1', 'score': 550.77}, {'connected_gene': 'DOCK7', 'score': 19.3}, {'connected_gene': 'ATG4C', 'score': 9.7}, {'connected_gene': 'ENSG00000270549', 'score': 0.16}]
chr1	GH01I062356	62356400	62357000	1.31	[{'connected_gene': 'USP1', 'score': 81.06}, {'connected_gene': 'ENSG00000271200', 'score': 36.61}, {'connected_gene': 'TM2D1', 'score': 23.17}, {'connected_gene': 'DOCK7', 'score': 22.04}, {'connected_gene': 'KANK4', 'score': 17.19}, {'connected_gene': 'LOC105378768', 'score': 0.2}]
chr1	GH01I061966	61966167	61967578	0.77	[{'connected_gene': 'USP1', 'score': 12.65}, {'connected_gene': 'ENSG00000270742', 'score': 12.61}, {'connected_gene': 'L1TD1', 'score': 4.67}, {'connected_gene': 'PATJ', 'score': 4.47}, {'connected_gene': 'GC01P061916', 'score': 0.23}, {'connected_gene': 'LAMTOR5P1', 'score': 0.19}]
chr1	GH01I062232	62232859	62233058	0.56	[{'connected_gene': 'USP1', 'score': 16.97}, {'connected_gene': 'KANK4', 'score': 14.75}, {'connected_gene': 'L1TD1', 'score': 4.19}, {'connected_gene': 'GC01M062237', 'score': 0.44}, {'connected_gene': 'GC01P062219', 'score': 0.39}]
chr1	GH01I061637	61637591	61642507	1.42	[{'connected_gene': 'USP1', 'score': 11.26}, {'connected_gene': 'RNU6-1177P', 'score': 10.88}, {'connected_gene': 'NFIA-AS2', 'score': 10.05}, {'connected_gene': 'MGC34796', 'score': 0.39}, {'connected_gene': 'LOC105378766', 'score': 0.19}]
chr1	GH01I061605	61605085	61607833	0.9	[{'connected_gene': 'USP1', 'score': 13.94}, {'connected_gene': 'NFIA-AS2', 'score': 9.9}, {'connected_gene': 'LOC105378766', 'score': 0.28}, {'connected_gene': 'MGC34796', 'score': 0.25}]
chr1	GH01I062448	62448321	62449090	0.43	[{'connected_gene': 'USP1', 'score': 0.39}, {'connected_gene': 'ENSG00000270549', 'score': 0.18}]
chr1	GH01I063316	63316187	63318942	1.45	[{'connected_gene': 'LINC00466', 'score': 555.47}, {'connected_gene': 'ITGB3BP', 'score': 19.01}, {'connected_gene': 'USP1', 'score': 12.66}, {'connected_gene': 'FOXD3', 'score': 0.44}]
chr1	GH01I061950	61950291	61952978	0.92	[{'connected_gene': 'PATJ', 'score': 6.92}, {'connected_gene': 'USP1', 'score': 2.23}, {'connected_gene': 'KANK4', 'score': 1.94}, {'connected_gene': 'GC01P061916', 'score': 0.28}, {'connected_gene': 'LAMTOR5P1', 'score': 0.17}]