PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000399759	[[3468737, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677], [3498957, 3499125]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000571088	[[3468737, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677], [3500211, 3500392]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000174621	[[3468742, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494647], [3495360, 3495677], [3500211, 3500392]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494647], [3495360, 3495568]]
ENST00000399756	[[3469087, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3496171]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000425167	[[3470071, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3492225, 3492258], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495661]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3492225, 3492258], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000574085	[[3470071, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494647], [3495360, 3495661]]	None
ENST00000576351	[[3470106, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491511, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491511, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000310522	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
ENST00000570742	[[3477115, 3477249], [3480419, 3480486], [3480891, 3481182]]	None
NM_080706	[[3468739, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3496171]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
NM_080705	[[3468739, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677], [3498957, 3499125]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
NM_018727	[[3468739, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677], [3500211, 3500336]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]
NM_080704	[[3468739, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495677], [3511720, 3511859], [3512602, 3512705]]	[[3470108, 3470281], [3474817, 3474933], [3475415, 3475543], [3476926, 3477249], [3480419, 3480486], [3480891, 3481057], [3483750, 3483821], [3486631, 3486724], [3489061, 3489220], [3491481, 3491661], [3493100, 3493399], [3493545, 3493686], [3494257, 3494410], [3494480, 3494647], [3495360, 3495644]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I003562	3562473	3563683	0.72	[{'connected_gene': 'TRPV1', 'score': 11.98}, {'connected_gene': 'SHPK', 'score': 8.07}, {'connected_gene': 'ASPA', 'score': 6.99}, {'connected_gene': 'TRPV3', 'score': 0.44}, {'connected_gene': 'ENSG00000263338', 'score': 0.37}]
chr17	GH17I003593	3593667	3595648	0.79	[{'connected_gene': 'TRPV1', 'score': 8.17}, {'connected_gene': 'TRPV3', 'score': 5.8}, {'connected_gene': 'ENSG00000261916', 'score': 0.44}, {'connected_gene': 'PIR44716', 'score': 0.39}, {'connected_gene': 'ENSG00000262304', 'score': 0.26}]
chr17	GH17I003609	3609478	3609537	0.5	[{'connected_gene': 'TRPV1', 'score': 550.77}, {'connected_gene': 'LOC100422717', 'score': 0.39}, {'connected_gene': 'ENSG00000262304', 'score': 0.31}, {'connected_gene': 'SHPK', 'score': 0.31}]
chr17	GH17I003597	3597065	3597124	0.5	[{'connected_gene': 'TRPV1', 'score': 550.39}, {'connected_gene': 'ENSG00000261916', 'score': 0.44}, {'connected_gene': 'PIR44716', 'score': 0.37}, {'connected_gene': 'ENSG00000262304', 'score': 0.28}]
chr17	GH17I003606	3606819	3606878	0.5	[{'connected_gene': 'TRPV1', 'score': 550.77}, {'connected_gene': 'ENSG00000261916', 'score': 0.77}, {'connected_gene': 'ENSG00000262304', 'score': 0.31}]
chr17	GH17I003130	3130707	3130950	0.22	[{'connected_gene': 'OR3A2', 'score': 16.83}, {'connected_gene': 'OR1A1', 'score': 13.99}, {'connected_gene': 'OR1E2', 'score': 11.74}, {'connected_gene': 'OR1G1', 'score': 9.97}, {'connected_gene': 'OR1A2', 'score': 9.15}, {'connected_gene': 'TRPV3', 'score': 3.02}, {'connected_gene': 'TRPV1', 'score': 1.63}, {'connected_gene': 'GC17P003146', 'score': 0.37}]
chr17	GH17I003528	3528491	3532326	1.43	[{'connected_gene': 'TRPV3', 'score': 40.69}, {'connected_gene': 'ASPA', 'score': 32.22}, {'connected_gene': 'OR1E2', 'score': 10.43}, {'connected_gene': 'CAMKK1', 'score': 3.36}, {'connected_gene': 'TRPV1', 'score': 3.19}, {'connected_gene': 'GC17M003518', 'score': 0.44}, {'connected_gene': 'SPATA22', 'score': 0.37}]
chr17	GH17I003574	3574163	3576390	0.38	[{'connected_gene': 'TRPV3', 'score': 13.47}, {'connected_gene': 'SHPK', 'score': 6.73}, {'connected_gene': 'ENSG00000263338', 'score': 0.77}, {'connected_gene': 'TRPV1', 'score': 0.29}]
chr17	GH17I003603	3603210	3604058	0.43	[{'connected_gene': 'ENSG00000261916', 'score': 550.77}, {'connected_gene': 'CTNS', 'score': 6.06}, {'connected_gene': 'TRPV1', 'score': 0.44}, {'connected_gene': 'ENSG00000262304', 'score': 0.29}]