PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000316881	[[54965269, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991399]]	[[54969060, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991349]]
ENST00000573108	[[54967881, 54968661], [54968715, 54968887]]	None
ENST00000537230	[[54968635, 54968661], [54968724, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991388]]	[[54969060, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991349]]
ENST00000572021	[[54968943, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54989465, 54989526], [54990752, 54990833]]	[[54989475, 54989526], [54990752, 54990833]]
ENST00000574234	[[54969472, 54969590], [54972703, 54972802], [54972881, 54973135]]	None
ENST00000570473	[[54973130, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981704]]	None
ENST00000570749	[[54976321, 54976541], [54978779, 54978939], [54981615, 54981849]]	None
ENST00000572550	[[54978787, 54978939], [54981615, 54981849], [54985828, 54985924], [54986107, 54986144]]	None
ENST00000574997	[[54985843, 54985924], [54990119, 54990478]]	None
NM_005082	[[54965269, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991409]]	[[54969060, 54969590], [54972703, 54972802], [54972881, 54972965], [54973286, 54973313], [54976475, 54976541], [54978779, 54978939], [54981615, 54981849], [54985828, 54985924], [54990752, 54991349]]

Promoter

Chrom	Start	End	Description
chr17	54991255	54991266	CAGE_peak_4_at_TRIM25_5end
chr17	54991369	54991386	CAGE_peak_2_at_TRIM25_5end
chr17	54991395	54991453	CAGE_peak_1_at_TRIM25_5end
chr17	54991800	54991803	CAGE_peak_8_at_TRIM25_5end
chr17	54991812	54991826	CAGE_peak_3_at_TRIM25_5end
chr17	54991844	54991855	CAGE_peak_5_at_TRIM25_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I056777	56777978	56778161	0.24	[{'connected_gene': 'NOG', 'score': 11.07}, {'connected_gene': 'TRIM25', 'score': 6.43}, {'connected_gene': 'SCPEP1', 'score': 4.26}, {'connected_gene': 'GC17M056765', 'score': 0.44}, {'connected_gene': 'GC17M056800', 'score': 0.34}, {'connected_gene': 'GC17M056657', 'score': 0.15}]
chr17	GH17I056911	56911602	56918381	2.66	[{'connected_gene': 'TRIM25', 'score': 575.96}, {'connected_gene': 'ENSG00000274213', 'score': 550.77}, {'connected_gene': 'DGKE', 'score': 23.59}, {'connected_gene': 'ENSG00000262298', 'score': 22.1}, {'connected_gene': 'SCPEP1', 'score': 17.48}]
chr17	GH17I056909	56909814	56911077	1.48	[{'connected_gene': 'TRIM25', 'score': 28.21}, {'connected_gene': 'SCPEP1', 'score': 16.32}, {'connected_gene': 'MIR3614', 'score': 0.37}]
chr17	GH17I056918	56918601	56919800	1.47	[{'connected_gene': 'TRIM25', 'score': 19.95}, {'connected_gene': 'SCPEP1', 'score': 5.21}, {'connected_gene': 'ENSG00000274213', 'score': 0.44}, {'connected_gene': 'ENSG00000262298', 'score': 0.34}]
chr17	GH17I056919	56919880	56919999	0.59	[{'connected_gene': 'TRIM25', 'score': 21.65}, {'connected_gene': 'SCPEP1', 'score': 3.89}, {'connected_gene': 'ENSG00000274213', 'score': 0.44}, {'connected_gene': 'ENSG00000262298', 'score': 0.37}]
chr17	GH17I056893	56893385	56894343	0.43	[{'connected_gene': 'TRIM25', 'score': 12.58}, {'connected_gene': 'C17orf67', 'score': 10.93}, {'connected_gene': 'MIR3614', 'score': 0.77}]
chr17	GH17I056819	56819601	56820199	1.29	[{'connected_gene': 'TRIM25', 'score': 11.99}, {'connected_gene': 'PIR41486', 'score': 0.39}, {'connected_gene': 'C17orf67', 'score': 0.37}, {'connected_gene': 'ENSG00000283209', 'score': 0.37}, {'connected_gene': 'GC17M056657', 'score': 0.22}]
chr17	GH17I057471	57471463	57479247	1.19	[{'connected_gene': 'TRIM25', 'score': 11.86}, {'connected_gene': 'ENSG00000279281', 'score': 0.31}, {'connected_gene': 'LOC101927557', 'score': 0.25}, {'connected_gene': 'MSI2', 'score': 0.08}]
chr17	GH17I056910	56909720	56909804	0.58	[{'connected_gene': 'TRIM25', 'score': 0.77}, {'connected_gene': 'MIR3614', 'score': 0.37}]
chr17	GH17I057648	57648675	57651729	1.11	[{'connected_gene': 'SRSF1', 'score': 53.98}, {'connected_gene': 'MKS1', 'score': 46.65}, {'connected_gene': 'ENSG00000262298', 'score': 31.75}, {'connected_gene': 'COIL', 'score': 27.63}, {'connected_gene': 'TSPOAP1', 'score': 13.19}, {'connected_gene': 'DGKE', 'score': 12.93}, {'connected_gene': 'TRIM25', 'score': 11.86}, {'connected_gene': 'RNU7-134P', 'score': 11.47}, {'connected_gene': 'VEZF1', 'score': 9.89}, {'connected_gene': 'GC17P057653', 'score': 0.77}, {'connected_gene': 'GC17P057625', 'score': 0.34}, {'connected_gene': 'MSI2', 'score': 0.05}]
chr17	GH17I056907	56907812	56909478	0.86	[{'connected_gene': 'SCPEP1', 'score': 7.05}, {'connected_gene': 'TRIM25', 'score': 0.44}, {'connected_gene': 'MIR3614', 'score': 0.37}]
chr17	GH17I056784	56784747	56788329	1.6	[{'connected_gene': 'C17orf67', 'score': 17.08}, {'connected_gene': 'NOG', 'score': 10.97}, {'connected_gene': 'TRIM25', 'score': 8.71}, {'connected_gene': 'SCPEP1', 'score': 6.4}, {'connected_gene': 'GC17M056800', 'score': 0.37}, {'connected_gene': 'GC17M056765', 'score': 0.37}, {'connected_gene': 'GC17M056657', 'score': 0.17}]
chr17	GH17I056903	56903790	56905176	0.38	[{'connected_gene': 'RNU6-1158P', 'score': 11.41}, {'connected_gene': 'C17orf67', 'score': 11.22}, {'connected_gene': 'TRIM25', 'score': 0.44}, {'connected_gene': 'MIR3614', 'score': 0.39}]
chr17	GH17I056901	56901335	56903173	0.79	[{'connected_gene': 'RNU6-1158P', 'score': 12.23}, {'connected_gene': 'C17orf67', 'score': 11.66}, {'connected_gene': 'SCPEP1', 'score': 7.93}, {'connected_gene': 'TRIM25', 'score': 0.39}, {'connected_gene': 'MIR3614', 'score': 0.39}]
chr17	GH17I056898	56898529	56900088	0.46	[{'connected_gene': 'RNU6-1158P', 'score': 12.24}, {'connected_gene': 'C17orf67', 'score': 11.66}, {'connected_gene': 'SCPEP1', 'score': 8.87}, {'connected_gene': 'MIR3614', 'score': 0.44}, {'connected_gene': 'TRIM25', 'score': 0.39}]
chr17	GH17I056897	56897680	56897829	0.66	[{'connected_gene': 'RNU6-1158P', 'score': 12.24}, {'connected_gene': 'C17orf67', 'score': 11.67}, {'connected_gene': 'MIR3614', 'score': 0.44}, {'connected_gene': 'TRIM25', 'score': 0.37}]
chr17	GH17I056899	56897151	56897249	0.4	[{'connected_gene': 'RNU6-1158P', 'score': 12.24}, {'connected_gene': 'C17orf67', 'score': 11.67}, {'connected_gene': 'MIR3614', 'score': 0.44}, {'connected_gene': 'TRIM25', 'score': 0.37}]
chr17	GH17I056889	56889978	56892240	0.67	[{'connected_gene': 'MIR3614', 'score': 550.77}, {'connected_gene': 'TRIM25', 'score': 12.58}, {'connected_gene': 'C17orf67', 'score': 11.23}, {'connected_gene': 'SCPEP1', 'score': 10.64}, {'connected_gene': 'ENSG00000262112', 'score': 0.77}]
chr17	GH17I056885	56885709	56888329	1.05	[{'connected_gene': 'ENSG00000262112', 'score': 550.77}, {'connected_gene': 'ENSG00000262298', 'score': 13.18}, {'connected_gene': 'C17orf67', 'score': 10.97}, {'connected_gene': 'MTVR2', 'score': 0.77}, {'connected_gene': 'TRIM25', 'score': 0.31}]
chr17	GH17I056869	56869951	56870402	0.65	[{'connected_gene': 'PIR52664', 'score': 550.77}, {'connected_gene': 'RNU6-1158P', 'score': 550.77}, {'connected_gene': 'GC17P056869', 'score': 550.77}, {'connected_gene': 'GC17P056872', 'score': 550.77}, {'connected_gene': 'TRIM25', 'score': 9.13}, {'connected_gene': 'SCPEP1', 'score': 4.3}, {'connected_gene': 'GC17M056657', 'score': 0.44}, {'connected_gene': 'GC17P056857', 'score': 0.39}]
chr17	GH17I056890	56889297	56889804	0.38	[{'connected_gene': 'ENSG00000262112', 'score': 550.77}, {'connected_gene': 'MIR3614', 'score': 550.77}, {'connected_gene': 'C17orf67', 'score': 11.23}, {'connected_gene': 'SCPEP1', 'score': 10.64}, {'connected_gene': 'TRIM25', 'score': 0.34}]