PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373087	[[37940152, 37940230], [37941059, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949980]]	[[37941097, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949212]]
ENST00000472312	[[37945599, 37946030], [37947201, 37947363]]	None
ENST00000471012	[[37947290, 37947436], [37947954, 37948203]]	[[37947290, 37947436], [37947954, 37948203]]
NM_001323550	[[37940118, 37940230], [37941062, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949978]]	[[37941097, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949212]]
NM_025079	[[37940118, 37940230], [37941059, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949978]]	[[37941097, 37941540], [37945890, 37946030], [37947201, 37947436], [37948034, 37948141], [37948337, 37949212]]
NM_001323551	[[37940118, 37940230], [37941059, 37941540], [37945890, 37946030], [37947201, 37947436], [37947950, 37948141], [37948337, 37949978]]	[[37948038, 37948141], [37948337, 37949212]]

Promoter

Chrom	Start	End	Description
chr1	37940102	37940131	CAGE_peak_2_at_ZC3H12A_5end
chr1	37940170	37940190	CAGE_peak_1_at_ZC3H12A_5end
chr1	37945588	37945604	CAGE_peak_3_at_ZC3H12A_5end
chr1	37947257	37947292	CAGE_peak_4_at_ZC3H12A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I037470	37470221	37488505	2.85	[{'connected_gene': 'ZC3H12A', 'score': 596.91}, {'connected_gene': 'MIR6732', 'score': 550.77}, {'connected_gene': 'LINC01137', 'score': 44.26}, {'connected_gene': 'MTF1', 'score': 33.94}, {'connected_gene': 'SNIP1', 'score': 21.25}, {'connected_gene': 'GNL2', 'score': 17.01}, {'connected_gene': 'DNALI1', 'score': 14.31}, {'connected_gene': 'SF3A3', 'score': 14.23}, {'connected_gene': 'FTH1P1', 'score': 10.37}, {'connected_gene': 'MEAF6', 'score': 9.98}, {'connected_gene': 'YRDC', 'score': 3.72}, {'connected_gene': 'C1orf122', 'score': 1.83}, {'connected_gene': 'PIR46555', 'score': 0.77}, {'connected_gene': 'GC01M037470', 'score': 0.44}]
chr1	GH01I037552	37552818	37554929	2.08	[{'connected_gene': 'SNIP1', 'score': 624.04}, {'connected_gene': 'C1orf109', 'score': 51.41}, {'connected_gene': 'SF3A3', 'score': 49.07}, {'connected_gene': 'GNL2', 'score': 42.15}, {'connected_gene': 'FTH1P1', 'score': 30.46}, {'connected_gene': 'YRDC', 'score': 19.59}, {'connected_gene': 'INPP5B', 'score': 15.78}, {'connected_gene': 'CDCA8', 'score': 10.18}, {'connected_gene': 'ZC3H12A', 'score': 10.16}, {'connected_gene': 'RSPO1', 'score': 5.68}, {'connected_gene': 'LINC01137', 'score': 4.49}, {'connected_gene': 'GC01P037546', 'score': 0.44}]
chr1	GH01I037507	37507668	37508571	0.69	[{'connected_gene': 'DNALI1', 'score': 25.12}, {'connected_gene': 'LINC01137', 'score': 15.32}, {'connected_gene': 'ZC3H12A', 'score': 10.99}, {'connected_gene': 'RPS27P9', 'score': 10.7}, {'connected_gene': 'SNIP1', 'score': 10.7}, {'connected_gene': 'GNL2', 'score': 10.17}, {'connected_gene': 'MEAF6', 'score': 0.44}, {'connected_gene': 'MIR5581', 'score': 0.44}]
chr1	GH01I037448	37448154	37450413	0.82	[{'connected_gene': 'LINC01137', 'score': 24.46}, {'connected_gene': 'ZC3H12A', 'score': 12.13}, {'connected_gene': 'RPS27P9', 'score': 10.66}, {'connected_gene': 'SNIP1', 'score': 10.66}, {'connected_gene': 'DNALI1', 'score': 10.66}, {'connected_gene': 'RSPO1', 'score': 5.49}, {'connected_gene': 'MEAF6', 'score': 4.47}, {'connected_gene': 'GC01M037470', 'score': 0.34}, {'connected_gene': 'PIR53142', 'score': 0.15}]
chr1	GH01I037451	37451804	37453531	0.74	[{'connected_gene': 'LINC01137', 'score': 33.94}, {'connected_gene': 'ZC3H12A', 'score': 12.13}, {'connected_gene': 'RPS27P9', 'score': 10.67}, {'connected_gene': 'SNIP1', 'score': 10.67}, {'connected_gene': 'DNALI1', 'score': 10.67}, {'connected_gene': 'RSPO1', 'score': 5.49}, {'connected_gene': 'GC01M037470', 'score': 0.37}, {'connected_gene': 'PIR53142', 'score': 0.15}]
chr1	GH01I037497	37497975	37498109	0.76	[{'connected_gene': 'LINC01137', 'score': 11.76}, {'connected_gene': 'ZC3H12A', 'score': 11.76}, {'connected_gene': 'RPS27P9', 'score': 11.04}, {'connected_gene': 'SNIP1', 'score': 11.04}, {'connected_gene': 'DNALI1', 'score': 11.04}, {'connected_gene': 'MIR5581', 'score': 0.77}, {'connected_gene': 'MEAF6', 'score': 0.37}, {'connected_gene': 'PIR46555', 'score': 0.37}]
chr1	GH01I037496	37496512	37496817	0.4	[{'connected_gene': 'LINC01137', 'score': 11.76}, {'connected_gene': 'ZC3H12A', 'score': 11.76}, {'connected_gene': 'RPS27P9', 'score': 11.04}, {'connected_gene': 'SNIP1', 'score': 11.04}, {'connected_gene': 'DNALI1', 'score': 11.03}, {'connected_gene': 'MIR5581', 'score': 0.77}, {'connected_gene': 'PIR46555', 'score': 0.39}, {'connected_gene': 'MEAF6', 'score': 0.37}]
chr1	GH01I037845	37845201	37847600	1.05	[{'connected_gene': 'MTF1', 'score': 29.85}, {'connected_gene': 'ZC3H12A', 'score': 28.85}, {'connected_gene': 'YRDC', 'score': 13.01}, {'connected_gene': 'C1orf122', 'score': 11.27}, {'connected_gene': 'ENSG00000233728', 'score': 10.5}, {'connected_gene': 'CDCA8', 'score': 9.84}, {'connected_gene': 'C1orf109', 'score': 9.84}, {'connected_gene': 'FHL3', 'score': 5.64}, {'connected_gene': 'SNIP1', 'score': 3.05}, {'connected_gene': 'RPS2P13', 'score': 0.44}]
chr1	GH01I037819	37819949	37820149	0.45	[{'connected_gene': 'MTF1', 'score': 16.12}, {'connected_gene': 'ENSG00000230955', 'score': 11.44}, {'connected_gene': 'CDCA8', 'score': 9.72}, {'connected_gene': 'C1orf109', 'score': 9.72}, {'connected_gene': 'INPP5B', 'score': 9.44}, {'connected_gene': 'ZC3H12A', 'score': 5.59}, {'connected_gene': 'GC01M037827', 'score': 0.77}, {'connected_gene': 'PIR39326', 'score': 0.77}, {'connected_gene': 'PIR53410', 'score': 0.44}]
chr1	GH01I037825	37825201	37826000	0.6	[{'connected_gene': 'MTF1', 'score': 37.74}, {'connected_gene': 'INPP5B', 'score': 27.08}, {'connected_gene': 'ZC3H12A', 'score': 25.35}, {'connected_gene': 'ENSG00000230955', 'score': 11.77}, {'connected_gene': 'ENSG00000233728', 'score': 11.37}, {'connected_gene': 'SNIP1', 'score': 2.64}, {'connected_gene': 'YRDC', 'score': 2.15}, {'connected_gene': 'GC01M037827', 'score': 0.77}, {'connected_gene': 'PIR39326', 'score': 0.77}, {'connected_gene': 'RPS2P13', 'score': 0.37}]
chr1	GH01I037850	37850001	37853800	1.36	[{'connected_gene': 'MTF1', 'score': 45.73}, {'connected_gene': 'INPP5B', 'score': 36.9}, {'connected_gene': 'ZC3H12A', 'score': 25.89}, {'connected_gene': 'YRDC', 'score': 13.25}, {'connected_gene': 'C1orf122', 'score': 10.84}, {'connected_gene': 'ENSG00000233728', 'score': 10.58}, {'connected_gene': 'SNIP1', 'score': 2.75}, {'connected_gene': 'RPS2P13', 'score': 0.39}]
chr1	GH01I037545	37545130	37545378	0.43	[{'connected_gene': 'FTH1P1', 'score': 562.29}, {'connected_gene': 'GC01P037545', 'score': 550.77}, {'connected_gene': 'GC01P037546', 'score': 550.77}, {'connected_gene': 'GNL2', 'score': 35.96}, {'connected_gene': 'SF3A3', 'score': 21.34}, {'connected_gene': 'SNIP1', 'score': 15.7}, {'connected_gene': 'MEAF6', 'score': 11.86}, {'connected_gene': 'INPP5B', 'score': 11.38}, {'connected_gene': 'CDCA8', 'score': 10.17}, {'connected_gene': 'C1orf109', 'score': 10.17}, {'connected_gene': 'ZC3H12A', 'score': 2.5}, {'connected_gene': 'MTF1', 'score': 2.15}]
chr1	GH01I037842	37842683	37842892	0.38	[{'connected_gene': 'RPS2P13', 'score': 550.77}, {'connected_gene': 'ZC3H12A', 'score': 12.88}, {'connected_gene': 'YRDC', 'score': 11.47}, {'connected_gene': 'C1orf122', 'score': 11.45}, {'connected_gene': 'ENSG00000233728', 'score': 10.72}, {'connected_gene': 'MTF1', 'score': 9.16}, {'connected_gene': 'FHL3', 'score': 4.58}, {'connected_gene': 'SNIP1', 'score': 2.26}]
chr1	GH01I037821	37821486	37821727	0.24	[{'connected_gene': 'GC01M037827', 'score': 550.77}, {'connected_gene': 'PIR39326', 'score': 550.77}, {'connected_gene': 'MTF1', 'score': 43.15}, {'connected_gene': 'ZC3H12A', 'score': 21.26}, {'connected_gene': 'ENSG00000230955', 'score': 11.46}, {'connected_gene': 'CDCA8', 'score': 9.72}, {'connected_gene': 'C1orf109', 'score': 9.72}, {'connected_gene': 'SNIP1', 'score': 2.83}, {'connected_gene': 'YRDC', 'score': 2.62}, {'connected_gene': 'PIR53410', 'score': 0.44}]
chr1	GH01I037544	37544183	37544803	0.47	[{'connected_gene': 'GC01P037545', 'score': 550.77}, {'connected_gene': 'GC01P037546', 'score': 550.77}, {'connected_gene': 'FTH1P1', 'score': 550.77}, {'connected_gene': 'MEAF6', 'score': 25.53}, {'connected_gene': 'GNL2', 'score': 10.93}, {'connected_gene': 'CDCA8', 'score': 10.17}, {'connected_gene': 'C1orf109', 'score': 10.17}, {'connected_gene': 'LINC01137', 'score': 4.5}, {'connected_gene': 'ZC3H12A', 'score': 3.52}, {'connected_gene': 'MTF1', 'score': 2.35}, {'connected_gene': 'SNIP1', 'score': 1.77}, {'connected_gene': 'LOC105378649', 'score': 0.39}]