PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000344293	[[7860466, 7860838], [7866280, 7866523], [8005882, 8007705], [8019203, 8019286], [8051040, 8051293], [8055693, 8055800], [8056599, 8058590]]	[[7860672, 7860838], [7866280, 7866523], [8005882, 8007705], [8019203, 8019286], [8051040, 8051293], [8055693, 8055800], [8056599, 8056714]]
NM_031923	[[7860466, 7860838], [7866280, 7866523], [8005882, 8007705], [8019203, 8019286], [8051040, 8051293], [8055693, 8055800], [8056599, 8057016]]	[[7860672, 7860838], [7866280, 7866523], [8005882, 8007705], [8019203, 8019286], [8051040, 8051293], [8055693, 8055800], [8056599, 8056714]]

Promoter

Chrom	Start	End	Description
chr10	7860460	7860497	CAGE_peak_1_at_TAF3_5end
chr10	8006992	8007014	CAGE_peak_2_at_TAF3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I007817	7817578	7819853	2.08	[{'connected_gene': 'TAF3', 'score': 550.77}, {'connected_gene': 'ATP5F1C', 'score': 15.15}, {'connected_gene': 'ITIH2', 'score': 5.08}, {'connected_gene': 'GC10M007828', 'score': 0.39}]
chr10	GH10I007872	7872201	7872600	0.87	[{'connected_gene': 'TAF3', 'score': 10.83}, {'connected_gene': 'KIN', 'score': 9.89}, {'connected_gene': 'ATP5F1C', 'score': 5.23}, {'connected_gene': 'GC10P007866', 'score': 0.44}, {'connected_gene': 'GC10M007907', 'score': 0.26}]
chr10	GH10I007480	7480179	7486707	1.48	[{'connected_gene': 'SFMBT2', 'score': 9.53}, {'connected_gene': 'TAF3', 'score': 4.23}, {'connected_gene': 'KIN', 'score': 1.2}, {'connected_gene': 'GC10M007486', 'score': 0.77}, {'connected_gene': 'RNU6-535P', 'score': 0.77}, {'connected_gene': 'LOC105376388', 'score': 0.39}]
chr10	GH10I007971	7971626	7972036	0.87	[{'connected_gene': 'SFMBT2', 'score': 9.94}, {'connected_gene': 'GC10P007984', 'score': 0.39}, {'connected_gene': 'GC10M007907', 'score': 0.22}, {'connected_gene': 'TAF3', 'score': 0.1}]
chr10	GH10I007406	7406729	7411687	2.47	[{'connected_gene': 'SFMBT2', 'score': 559.56}, {'connected_gene': 'KIN', 'score': 18.66}, {'connected_gene': 'TAF3', 'score': 1.27}, {'connected_gene': 'ENSG00000278982', 'score': 0.77}, {'connected_gene': 'GC10P007374', 'score': 0.29}]
chr10	GH10I007860	7860274	7860648	0.22	[{'connected_gene': 'ATP5F1C', 'score': 10.46}, {'connected_gene': 'GC10P007866', 'score': 0.44}, {'connected_gene': 'ENSG00000233990', 'score': 0.31}, {'connected_gene': 'TAF3', 'score': 0.26}]
chr10	GH10I007909	7908958	7909107	0.82	[{'connected_gene': 'ATP5F1C', 'score': 5.47}, {'connected_gene': 'GC10M007907', 'score': 0.44}, {'connected_gene': 'GC10P007866', 'score': 0.26}, {'connected_gene': 'TAF3', 'score': 0.16}]
chr10	GH10I007903	7903581	7904464	0.2	[{'connected_gene': 'ATP5F1C', 'score': 4.9}, {'connected_gene': 'GC10M007907', 'score': 0.39}, {'connected_gene': 'GC10P007866', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.17}]
chr10	GH10I007857	7857201	7857400	0.31	[{'connected_gene': 'ATP5F1C', 'score': 9.61}, {'connected_gene': 'GC10P007866', 'score': 0.44}, {'connected_gene': 'ENSG00000233990', 'score': 0.34}, {'connected_gene': 'TAF3', 'score': 0.28}]
chr10	GH10I007854	7854305	7856119	0.2	[{'connected_gene': 'ITIH2', 'score': 4.85}, {'connected_gene': 'GC10P007866', 'score': 0.39}, {'connected_gene': 'ENSG00000233990', 'score': 0.34}, {'connected_gene': 'TAF3', 'score': 0.28}]
chr10	GH10I008137	8137201	8138000	0.55	[{'connected_gene': 'GATA3', 'score': 13.47}, {'connected_gene': 'GATA3-AS1', 'score': 11.57}, {'connected_gene': 'ENSG00000232638', 'score': 11.56}, {'connected_gene': 'TAF3', 'score': 8.19}, {'connected_gene': 'KIN', 'score': 1.2}, {'connected_gene': 'PRPF38AP1', 'score': 0.34}, {'connected_gene': 'LOC105376395', 'score': 0.26}, {'connected_gene': 'GC10P008092', 'score': 0.25}, {'connected_gene': 'GC10M008036', 'score': 0.11}, {'connected_gene': 'GC10M008037', 'score': 0.11}]
chr10	GH10I007928	7928256	7929246	0.46	[{'connected_gene': 'GATA3', 'score': 10.41}, {'connected_gene': 'ENSG00000232638', 'score': 10.41}, {'connected_gene': 'GATA3-AS1', 'score': 10.41}, {'connected_gene': 'GC10M007907', 'score': 0.39}, {'connected_gene': 'GC10P007984', 'score': 0.22}, {'connected_gene': 'TAF3', 'score': 0.14}]
chr10	GH10I008012	8012861	8013451	0.2	[{'connected_gene': 'GATA3', 'score': 11.01}, {'connected_gene': 'ENSG00000232638', 'score': 11.0}, {'connected_gene': 'GATA3-AS1', 'score': 10.98}, {'connected_gene': 'PIR35933', 'score': 0.34}, {'connected_gene': 'GC10P007984', 'score': 0.31}, {'connected_gene': 'TAF3', 'score': 0.08}]
chr10	GH10I008049	8049034	8065063	2.51	[{'connected_gene': 'GATA3', 'score': 555.85}, {'connected_gene': 'KIN', 'score': 65.97}, {'connected_gene': 'TAF3', 'score': 17.89}, {'connected_gene': 'SFMBT2', 'score': 9.94}, {'connected_gene': 'GATA3-AS1', 'score': 0.77}, {'connected_gene': 'ENSG00000232638', 'score': 0.44}, {'connected_gene': 'GC10P008092', 'score': 0.28}, {'connected_gene': 'GC10M008036', 'score': 0.07}, {'connected_gene': 'GC10M008037', 'score': 0.07}]
chr10	GH10I008702	8702010	8703639	0.92	[{'connected_gene': 'KIN', 'score': 38.51}, {'connected_gene': 'TAF3', 'score': 10.39}, {'connected_gene': 'GC10P008711', 'score': 0.44}, {'connected_gene': 'GC10M008656', 'score': 0.25}, {'connected_gene': 'RNA5SP299', 'score': 0.25}, {'connected_gene': 'LOC105376400', 'score': 0.05}]
chr10	GH10I007946	7945198	7945347	0.57	[{'connected_gene': 'GC10M007907', 'score': 0.29}, {'connected_gene': 'GC10P007984', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.13}]
chr10	GH10I007890	7890450	7891162	0.31	[{'connected_gene': 'GC10P007866', 'score': 0.34}, {'connected_gene': 'GC10M007907', 'score': 0.34}, {'connected_gene': 'TAF3', 'score': 0.19}]
chr10	GH10I007931	7931244	7933265	0.95	[{'connected_gene': 'GC10M007907', 'score': 0.37}, {'connected_gene': 'GC10P007984', 'score': 0.23}, {'connected_gene': 'TAF3', 'score': 0.14}]
chr10	GH10I007856	7856856	7856941	0.4	[{'connected_gene': 'GC10P007866', 'score': 0.44}, {'connected_gene': 'ENSG00000233990', 'score': 0.34}, {'connected_gene': 'TAF3', 'score': 0.28}]
chr10	GH10I007943	7943938	7944087	0.54	[{'connected_gene': 'GC10M007907', 'score': 0.31}, {'connected_gene': 'GC10P007984', 'score': 0.26}, {'connected_gene': 'TAF3', 'score': 0.13}]
chr10	GH10I007952	7952338	7952658	0.63	[{'connected_gene': 'GC10P007984', 'score': 0.29}, {'connected_gene': 'GC10M007907', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.12}]
chr10	GH10I007908	7908658	7908807	0.66	[{'connected_gene': 'GC10M007907', 'score': 0.44}, {'connected_gene': 'GC10P007866', 'score': 0.26}, {'connected_gene': 'TAF3', 'score': 0.16}]
chr10	GH10I007945	7945558	7945707	0.57	[{'connected_gene': 'GC10M007907', 'score': 0.29}, {'connected_gene': 'GC10P007984', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.13}]
chr10	GH10I007937	7937281	7938435	0.46	[{'connected_gene': 'GC10M007907', 'score': 0.34}, {'connected_gene': 'GC10P007984', 'score': 0.25}, {'connected_gene': 'TAF3', 'score': 0.13}]
chr10	GH10I007947	7947503	7949583	0.4	[{'connected_gene': 'GC10M007907', 'score': 0.29}, {'connected_gene': 'GC10P007984', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.12}]
chr10	GH10I007956	7956138	7957425	1.2	[{'connected_gene': 'GC10P007984', 'score': 0.31}, {'connected_gene': 'GC10M007907', 'score': 0.26}, {'connected_gene': 'TAF3', 'score': 0.12}]
chr10	GH10I007951	7951204	7952227	0.56	[{'connected_gene': 'GC10P007984', 'score': 0.29}, {'connected_gene': 'GC10M007907', 'score': 0.28}, {'connected_gene': 'TAF3', 'score': 0.12}]
chr10	GH10I007942	7942813	7943758	0.73	[{'connected_gene': 'GC10M007907', 'score': 0.31}, {'connected_gene': 'GC10P007984', 'score': 0.26}, {'connected_gene': 'TAF3', 'score': 0.13}]