PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000256460	[[9799025, 9799305], [9799412, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803441], [9804597, 9804736], [9804822, 9804897], [9807442, 9807574], [9809350, 9809465], [9811515, 9811661]]	[[9799222, 9799305], [9799412, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803441], [9804597, 9804736], [9804822, 9804897], [9807442, 9807574], [9809350, 9809433]]
ENST00000496534	[[9799030, 9799530], [9801171, 9801259], [9801355, 9802254]]	None
ENST00000421120	[[9799031, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803409]]	[[9799200, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803409]]
ENST00000482803	[[9799037, 9799305], [9799412, 9799731]]	None
ENST00000397277	[[9799075, 9799305], [9799412, 9799530], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803441], [9804597, 9804736], [9804822, 9804897], [9807442, 9807574], [9807808, 9807897], [9809350, 9809465], [9811515, 9811645]]	[[9807860, 9807897], [9809350, 9809433]]
ENST00000411972	[[9803371, 9803441], [9804597, 9804736], [9804822, 9804897], [9809350, 9809465], [9811515, 9811676]]	[[9803371, 9803441], [9804597, 9804736], [9804822, 9804897], [9809350, 9809433]]
NM_003656	[[9799028, 9799305], [9799412, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803441], [9804597, 9804736], [9804822, 9804897], [9807442, 9807574], [9809350, 9809465], [9811515, 9811668]]	[[9799222, 9799305], [9799412, 9799530], [9801171, 9801259], [9801355, 9801434], [9802339, 9802452], [9803144, 9803220], [9803314, 9803441], [9804597, 9804736], [9804822, 9804897], [9807442, 9807574], [9809350, 9809433]]

Promoter

Chrom	Start	End	Description
chr3	9811595	9811666	CAGE_peak_1_at_CAMK1_5end
chr3	9811674	9811686	CAGE_peak_2_at_CAMK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I009768	9768194	9771286	1.94	[{'connected_gene': 'CAMK1', 'score': 550.77}, {'connected_gene': 'BRK1', 'score': 12.82}, {'connected_gene': 'PRRT3', 'score': 11.21}, {'connected_gene': 'TTLL3', 'score': 9.62}, {'connected_gene': 'RPUSD3', 'score': 6.55}, {'connected_gene': 'OGG1', 'score': 0.37}]
chr3	GH03I009861	9861190	9866062	1.62	[{'connected_gene': 'IL17RC', 'score': 37.28}, {'connected_gene': 'JAGN1', 'score': 33.62}, {'connected_gene': 'CIDEC', 'score': 25.99}, {'connected_gene': 'TADA3', 'score': 14.1}, {'connected_gene': 'IL17RE', 'score': 13.67}, {'connected_gene': 'FANCD2', 'score': 13.55}, {'connected_gene': 'ARPC4', 'score': 12.18}, {'connected_gene': 'RNU6-882P', 'score': 11.98}, {'connected_gene': 'THUMPD3', 'score': 11.85}, {'connected_gene': 'TTLL3', 'score': 11.12}, {'connected_gene': 'BRPF1', 'score': 11.06}, {'connected_gene': 'ARPC4-TTLL3', 'score': 10.72}, {'connected_gene': 'CAMK1', 'score': 10.51}, {'connected_gene': 'CPNE9', 'score': 10.32}, {'connected_gene': 'FANCD2OS', 'score': 10.28}, {'connected_gene': 'CRELD1', 'score': 6.65}, {'connected_gene': 'RPUSD3', 'score': 1.77}, {'connected_gene': 'OGG1', 'score': 1.31}, {'connected_gene': 'MARK2P1', 'score': 0.44}, {'connected_gene': 'GC03M009835', 'score': 0.23}]
chr3	GH03I009751	9751814	9751854	0.46	[{'connected_gene': 'OGG1', 'score': 550.77}, {'connected_gene': 'CAMK1', 'score': 0.37}]
chr3	GH03I009752	9752047	9752587	0.52	[{'connected_gene': 'OGG1', 'score': 0.77}, {'connected_gene': 'CAMK1', 'score': 0.37}]
chr3	GH03I009787	9787354	9788129	0.6	[{'connected_gene': 'TTLL3', 'score': 10.14}, {'connected_gene': 'ARPC4', 'score': 0.77}, {'connected_gene': 'TADA3', 'score': 0.44}, {'connected_gene': 'CAMK1', 'score': 0.37}, {'connected_gene': 'OGG1', 'score': 0.28}]
chr3	GH03I010188	10188774	10200915	1.86	[{'connected_gene': 'BRPF1', 'score': 82.83}, {'connected_gene': 'SETD5', 'score': 73.25}, {'connected_gene': 'IRAK2', 'score': 60.93}, {'connected_gene': 'GHRLOS', 'score': 48.14}, {'connected_gene': 'LINC00852', 'score': 30.38}, {'connected_gene': 'TATDN2', 'score': 26.94}, {'connected_gene': 'FANCD2', 'score': 22.57}, {'connected_gene': 'GHRL', 'score': 19.15}, {'connected_gene': 'TTLL3', 'score': 18.85}, {'connected_gene': 'SEC13', 'score': 18.54}, {'connected_gene': 'VHL', 'score': 18.5}, {'connected_gene': 'JAGN1', 'score': 13.72}, {'connected_gene': 'EMC3-AS1', 'score': 12.84}, {'connected_gene': 'CYCSP10', 'score': 12.78}, {'connected_gene': 'ENSG00000206567', 'score': 11.58}, {'connected_gene': 'THUMPD3', 'score': 11.34}, {'connected_gene': 'FANCD2OS', 'score': 11.3}, {'connected_gene': 'PRRT3', 'score': 11.19}, {'connected_gene': 'BRK1', 'score': 10.76}, {'connected_gene': 'ENSG00000269894', 'score': 10.57}, {'connected_gene': 'OGG1', 'score': 10.5}, {'connected_gene': 'RPUSD3', 'score': 10.16}, {'connected_gene': 'THUMPD3-AS1', 'score': 10.12}, {'connected_gene': 'CAMK1', 'score': 5.94}, {'connected_gene': 'ARPC4', 'score': 1.57}, {'connected_gene': 'GC03M010202', 'score': 0.39}]
chr3	GH03I009777	9777842	9782400	1.01	[{'connected_gene': 'TADA3', 'score': 10.65}, {'connected_gene': 'TTLL3', 'score': 9.49}, {'connected_gene': 'RPUSD3', 'score': 5.7}, {'connected_gene': 'ARPC4', 'score': 0.39}, {'connected_gene': 'CAMK1', 'score': 0.39}, {'connected_gene': 'OGG1', 'score': 0.29}]
chr3	GH03I010201	10201193	10207849	1.63	[{'connected_gene': 'GC03M010202', 'score': 550.77}, {'connected_gene': 'IRAK2', 'score': 24.19}, {'connected_gene': 'TATDN2', 'score': 15.85}, {'connected_gene': 'VHL', 'score': 15.48}, {'connected_gene': 'GHRLOS', 'score': 15.31}, {'connected_gene': 'ARPC4', 'score': 14.0}, {'connected_gene': 'FANCD2OS', 'score': 11.28}, {'connected_gene': 'GHRL', 'score': 10.65}, {'connected_gene': 'SEC13', 'score': 9.83}, {'connected_gene': 'CAMK1', 'score': 9.61}, {'connected_gene': 'TADA3', 'score': 9.28}, {'connected_gene': 'ARPC4-TTLL3', 'score': 9.28}, {'connected_gene': 'LINC00852', 'score': 4.91}]