PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371649	[[139756570, 139756948], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760737]]	[[139756907, 139756948], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]
ENST00000224073	[[139756570, 139756797], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760738]]	[[139756735, 139756797], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]
ENST00000371648	[[139756941, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760718]]	[[139757322, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]
NM_001281297	[[139756565, 139756948], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760788]]	[[139756907, 139756948], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]
NM_003792	[[139756565, 139756797], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760788]]	[[139756735, 139756797], [139757357, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]
NM_001281299	[[139756565, 139756797], [139757357, 139757451], [139757793, 139757900], [139758271, 139758323], [139760632, 139760788]]	[[139756735, 139756797], [139757357, 139757451], [139757793, 139757900], [139758271, 139758323], [139760632, 139760710]]
NM_001281298	[[139756565, 139756797], [139757357, 139757451], [139757802, 139757900], [139758271, 139758323], [139760632, 139760788]]	[[139756735, 139756797], [139757357, 139757451], [139757802, 139757900], [139758271, 139758323], [139760632, 139760710]]
NM_153200	[[139757120, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760788]]	[[139757322, 139757451], [139757739, 139757900], [139758271, 139758323], [139760632, 139760710]]

Promoter

Chrom	Start	End	Description
chr9	139760717	139760728	CAGE_peak_2_at_EDF1_5end
chr9	139760746	139760769	CAGE_peak_1_at_EDF1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I136864	136864894	136867217	2.01	[{'connected_gene': 'EDF1', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 29.59}, {'connected_gene': 'SDCCAG3', 'score': 25.73}, {'connected_gene': 'ANAPC2', 'score': 22.17}, {'connected_gene': 'LOC651337', 'score': 15.59}, {'connected_gene': 'INPP5E', 'score': 13.69}, {'connected_gene': 'DPH7', 'score': 12.41}, {'connected_gene': 'PHPT1', 'score': 11.73}, {'connected_gene': 'RABL6', 'score': 10.43}, {'connected_gene': 'LCN12', 'score': 8.56}, {'connected_gene': 'LCNL1', 'score': 6.23}, {'connected_gene': 'MAMDC4', 'score': 0.37}]
chr9	GH09I136875	136875350	136875418	0.77	[{'connected_gene': 'EDF1', 'score': 0.44}, {'connected_gene': 'TRAF2', 'score': 0.44}]
chr9	GH09I136876	136875269	136875298	0.77	[{'connected_gene': 'EDF1', 'score': 0.44}, {'connected_gene': 'TRAF2', 'score': 0.44}]
chr9	GH09I136846	136846758	136862792	2.28	[{'connected_gene': 'PHPT1', 'score': 561.19}, {'connected_gene': 'MAMDC4', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 29.94}, {'connected_gene': 'SDCCAG3', 'score': 24.18}, {'connected_gene': 'LOC651337', 'score': 15.59}, {'connected_gene': 'ANAPC2', 'score': 11.8}, {'connected_gene': 'DPH7', 'score': 10.62}, {'connected_gene': 'LCN12', 'score': 8.45}, {'connected_gene': 'DPP7', 'score': 5.17}, {'connected_gene': 'EDF1', 'score': 0.39}, {'connected_gene': 'AJM1', 'score': 0.39}]