PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000241261	[[172223297, 172224709], [172227006, 172227111], [172229406, 172229449], [172232650, 172232788], [172241042, 172241297]]	[[172224281, 172224709], [172227006, 172227111], [172229406, 172229449], [172232650, 172232788], [172241042, 172241174]]
ENST00000420541	[[172223451, 172224709], [172232650, 172232788], [172241042, 172241265]]	[[172224673, 172224709], [172232650, 172232788], [172241042, 172241174]]
ENST00000430881	[[172225073, 172225239], [172227006, 172227111], [172232650, 172232788], [172241042, 172241100]]	[[172227084, 172227111], [172232650, 172232788], [172241042, 172241100]]
ENST00000494851	[[172226935, 172227111], [172229406, 172229449], [172232650, 172232788], [172241042, 172241257]]	None
ENST00000472804	[[172229234, 172229449], [172232650, 172232788], [172241042, 172241255]]	None
ENST00000466777	[[172235144, 172236255], [172241042, 172241257]]	None
NM_003810	[[172223297, 172224709], [172227006, 172227111], [172229406, 172229449], [172232650, 172232788], [172241042, 172241297]]	[[172224281, 172224709], [172227006, 172227111], [172229406, 172229449], [172232650, 172232788], [172241042, 172241174]]
NR_033994	[[172223297, 172224709], [172227006, 172227111], [172232650, 172232788], [172241042, 172241297]]	None
NM_001190942	[[172223297, 172224709], [172232650, 172232788], [172241042, 172241297]]	[[172224673, 172224709], [172232650, 172232788], [172241042, 172241174]]
NM_001190943	[[172235144, 172236255], [172241042, 172241265]]	[[172236189, 172236255], [172241042, 172241174]]

Promoter

Chrom	Start	End	Description
chr3	172241213	172241228	CAGE_peak_1_at_TNFSF10_5end
chr3	172241250	172241274	CAGE_peak_2_at_TNFSF10_5end
chr3	172241584	172241601	CAGE_peak_3_at_TNFSF10_5end
chr3	172241607	172241615	CAGE_peak_4_at_TNFSF10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I172514	172514498	172518723	1.38	[{'connected_gene': 'TNFSF10', 'score': 2.2}, {'connected_gene': 'FNDC3B', 'score': 1.35}, {'connected_gene': 'LOC100856791', 'score': 0.44}, {'connected_gene': 'GC03P172523', 'score': 0.44}, {'connected_gene': 'GHSR', 'score': 0.2}]
chr3	GH03I172600	172600112	172603011	0.96	[{'connected_gene': 'TNFSF10', 'score': 11.8}, {'connected_gene': 'GHSR', 'score': 10.94}, {'connected_gene': 'GC03M172603', 'score': 0.77}, {'connected_gene': 'SLC31A1P1', 'score': 0.77}, {'connected_gene': 'LINC02068', 'score': 0.44}]
chr3	GH03I172606	172606880	172608828	1.26	[{'connected_gene': 'TNFSF10', 'score': 11.65}, {'connected_gene': 'GHSR', 'score': 11.05}, {'connected_gene': 'SLC31A1P1', 'score': 0.77}, {'connected_gene': 'PIR41392', 'score': 0.22}]
chr3	GH03I172607	172606200	172606401	0.38	[{'connected_gene': 'TNFSF10', 'score': 11.65}, {'connected_gene': 'GHSR', 'score': 11.05}, {'connected_gene': 'SLC31A1P1', 'score': 0.77}, {'connected_gene': 'PIR41392', 'score': 0.21}]
chr3	GH03I172476	172476402	172478197	1.04	[{'connected_gene': 'TNFSF10', 'score': 11.93}, {'connected_gene': 'GHSR', 'score': 11.74}, {'connected_gene': 'RNU6-547P', 'score': 9.61}, {'connected_gene': 'LOC100856791', 'score': 0.26}, {'connected_gene': 'GC03P172523', 'score': 0.26}]
chr3	GH03I172586	172586443	172586805	1.11	[{'connected_gene': 'TNFSF10', 'score': 13.79}, {'connected_gene': 'GHSR', 'score': 10.07}, {'connected_gene': 'LINC02068', 'score': 0.44}]
chr3	GH03I172490	172490251	172490400	0.86	[{'connected_gene': 'TNFSF10', 'score': 12.31}, {'connected_gene': 'GHSR', 'score': 11.99}, {'connected_gene': 'LOC100856791', 'score': 0.29}, {'connected_gene': 'GC03P172523', 'score': 0.29}]
chr3	GH03I172466	172466890	172467850	0.89	[{'connected_gene': 'TNFSF10', 'score': 10.71}, {'connected_gene': 'GHSR', 'score': 0.37}, {'connected_gene': 'LOC100856791', 'score': 0.23}, {'connected_gene': 'GC03P172523', 'score': 0.23}]
chr3	GH03I172536	172536257	172538287	1.12	[{'connected_gene': 'TNFSF10', 'score': 0.39}, {'connected_gene': 'LINC02068', 'score': 0.22}]
chr3	GH03I172547	172547936	172549767	0.91	[{'connected_gene': 'TNFSF10', 'score': 0.31}, {'connected_gene': 'LINC02068', 'score': 0.25}]
chr3	GH03I172541	172541095	172542000	1.32	[{'connected_gene': 'TNFSF10', 'score': 0.37}, {'connected_gene': 'LINC02068', 'score': 0.23}]
chr3	GH03I172577	172577935	172578446	0.51	[{'connected_gene': 'TNFSF10', 'score': 12.11}, {'connected_gene': 'LINC02068', 'score': 0.37}]
chr3	GH03I172579	172579426	172581399	1.26	[{'connected_gene': 'TNFSF10', 'score': 13.36}, {'connected_gene': 'LINC02068', 'score': 0.37}]
chr3	GH03I172557	172557400	172557601	0.76	[{'connected_gene': 'TNFSF10', 'score': 0.29}, {'connected_gene': 'LINC02068', 'score': 0.28}]
chr3	GH03I172532	172532123	172533333	0.2	[{'connected_gene': 'TNFSF10', 'score': 0.44}, {'connected_gene': 'LINC02068', 'score': 0.21}]
chr3	GH03I172533	172533459	172535827	0.31	[{'connected_gene': 'TNFSF10', 'score': 0.39}, {'connected_gene': 'LINC02068', 'score': 0.21}]
chr3	GH03I172528	172528308	172528990	0.2	[{'connected_gene': 'TNFSF10', 'score': 0.44}, {'connected_gene': 'LINC02068', 'score': 0.2}]
chr3	GH03I172549	172549900	172549937	0.58	[{'connected_gene': 'TNFSF10', 'score': 0.31}, {'connected_gene': 'LINC02068', 'score': 0.25}]
chr3	GH03I172550	172549955	172551568	1.14	[{'connected_gene': 'TNFSF10', 'score': 0.31}, {'connected_gene': 'LINC02068', 'score': 0.26}]
chr3	GH03I172530	172530355	172531225	1.25	[{'connected_gene': 'TNFSF10', 'score': 0.44}, {'connected_gene': 'LINC02068', 'score': 0.21}]
chr3	GH03I172539	172539810	172540877	0.43	[{'connected_gene': 'TNFSF10', 'score': 0.37}, {'connected_gene': 'LINC02068', 'score': 0.22}]
chr3	GH03I172568	172568601	172569400	0.67	[{'connected_gene': 'TNFSF10', 'score': 12.22}, {'connected_gene': 'LINC02068', 'score': 0.31}]
chr3	GH03I172552	172552064	172555484	1.11	[{'connected_gene': 'TNFSF10', 'score': 21.69}, {'connected_gene': 'LINC02068', 'score': 0.26}]
chr3	GH03I172545	172545827	172547664	1.21	[{'connected_gene': 'TNFSF10', 'score': 0.34}, {'connected_gene': 'LINC02068', 'score': 0.25}]
chr3	GH03I172561	172561396	172564414	1.53	[{'connected_gene': 'TNFSF10', 'score': 1.37}, {'connected_gene': 'LINC02068', 'score': 0.29}]
chr3	GH03I172543	172542289	172542665	0.63	[{'connected_gene': 'TNFSF10', 'score': 0.37}, {'connected_gene': 'LINC02068', 'score': 0.23}]
chr3	GH03I172542	172542820	172544847	0.46	[{'connected_gene': 'TNFSF10', 'score': 0.34}, {'connected_gene': 'LINC02068', 'score': 0.23}]
chr3	GH03I172582	172582390	172583506	0.51	[{'connected_gene': 'TNFSF10', 'score': 12.1}, {'connected_gene': 'LINC02068', 'score': 0.39}]
chr3	GH03I172527	172527125	172528078	0.2	[{'connected_gene': 'TNFSF10', 'score': 0.77}, {'connected_gene': 'LINC02068', 'score': 0.2}]
chr3	GH03I172511	172511482	172514477	1.57	[{'connected_gene': 'FNDC3B', 'score': 3.58}, {'connected_gene': 'TNFSF10', 'score': 2.01}, {'connected_gene': 'LOC100856791', 'score': 0.44}, {'connected_gene': 'GC03P172523', 'score': 0.44}, {'connected_gene': 'GHSR', 'score': 0.21}]
chr3	GH03I172590	172590672	172597023	1.9	[{'connected_gene': 'LINC02068', 'score': 557.05}, {'connected_gene': 'TNFSF10', 'score': 12.74}, {'connected_gene': 'GHSR', 'score': 10.66}]
chr3	GH03I172558	172558996	172559361	0.46	[{'connected_gene': 'LINC02068', 'score': 0.28}, {'connected_gene': 'TNFSF10', 'score': 0.28}]
chr3	GH03I172559	172559542	172561367	0.89	[{'connected_gene': 'LINC02068', 'score': 0.28}, {'connected_gene': 'TNFSF10', 'score': 0.28}]
chr3	GH03I172508	172508915	172509833	0.2	[{'connected_gene': 'LOC100856791', 'score': 0.39}, {'connected_gene': 'GC03P172523', 'score': 0.39}, {'connected_gene': 'TNFSF10', 'score': 0.39}, {'connected_gene': 'GHSR', 'score': 0.21}]
chr3	GH03I172519	172519702	172525195	2.06	[{'connected_gene': 'LOC100856791', 'score': 550.77}, {'connected_gene': 'GC03P172523', 'score': 550.77}, {'connected_gene': 'TNFSF10', 'score': 550.77}]