PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497512	[[78078377, 78078659], [78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78100108, 78100219], [78106249, 78106563], [78113363, 78113420], [78353393, 78353587], [78354360, 78354542]]	None
ENST00000514756	[[78108916, 78108960], [78113363, 78113420], [78305790, 78305921], [78352879, 78353024], [78353393, 78353534]]	None
ENST00000316355	[[78078303, 78078659], [78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78091212]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087077]]
ENST00000354403	[[78078356, 78078659], [78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78100108, 78100219], [78106249, 78106262]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78100108, 78100219], [78106249, 78106262]]
ENST00000502280	[[78078362, 78078389], [78078522, 78078659], [78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087337]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087077]]
ENST00000395640	[[78079449, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087216]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087077]]
ENST00000512918	[[78079508, 78079604], [78079685, 78079823], [78080519, 78080657], [78081873, 78082079]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082079]]
ENST00000509972	[[78079578, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78086163]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085636]]
NM_004354	[[78078356, 78078659], [78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78091213]]	[[78079685, 78079823], [78080519, 78080657], [78081873, 78082124], [78082632, 78082711], [78082801, 78082900], [78085426, 78085632], [78086953, 78087077]]

Promoter

Chrom	Start	End	Description
chr4	78078105	78078109	CAGE_peak_12_at_CCNG2_5end
chr4	78078343	78078406	CAGE_peak_1_at_CCNG2_5end
chr4	78078412	78078448	CAGE_peak_2_at_CCNG2_5end
chr4	78079509	78079563	CAGE_peak_3_at_CCNG2_5end
chr4	78079570	78079586	CAGE_peak_7_at_CCNG2_5end
chr4	78079649	78079662	CAGE_peak_19_at_CCNG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I077092	77092245	77094478	1.06	[{'connected_gene': 'CCNG2', 'score': 14.01}, {'connected_gene': 'SEPT11', 'score': 10.44}, {'connected_gene': 'SOWAHB', 'score': 5.84}, {'connected_gene': 'RPL7P17', 'score': 0.39}, {'connected_gene': 'GC04M077080', 'score': 0.37}]
chr4	GH04I077126	77126002	77128956	0.66	[{'connected_gene': 'CCNG2', 'score': 12.6}, {'connected_gene': 'SOWAHB', 'score': 5.61}, {'connected_gene': 'LOC339966', 'score': 0.39}, {'connected_gene': 'RNU6-1187P', 'score': 0.34}, {'connected_gene': 'GC04M077151', 'score': 0.34}]
chr4	GH04I077122	77122887	77124590	0.2	[{'connected_gene': 'CCNG2', 'score': 12.58}, {'connected_gene': 'CCNI', 'score': 11.94}, {'connected_gene': 'LOC339966', 'score': 0.39}, {'connected_gene': 'RNU6-1187P', 'score': 0.31}, {'connected_gene': 'GC04M077151', 'score': 0.31}]
chr4	GH04I077144	77144261	77148766	1.43	[{'connected_gene': 'CCNG2', 'score': 5.73}, {'connected_gene': 'CCNI', 'score': 3.86}, {'connected_gene': 'RNU6-1187P', 'score': 0.77}, {'connected_gene': 'GC04M077151', 'score': 0.77}, {'connected_gene': 'LOC339966', 'score': 0.29}]
chr4	GH04I077141	77141839	77143661	0.51	[{'connected_gene': 'CCNG2', 'score': 6.65}, {'connected_gene': 'RNU6-1187P', 'score': 0.44}, {'connected_gene': 'GC04M077151', 'score': 0.44}, {'connected_gene': 'LOC339966', 'score': 0.31}]
chr4	GH04I077151	77151785	77160165	2.52	[{'connected_gene': 'CCNG2', 'score': 558.22}, {'connected_gene': 'LOC101928864', 'score': 550.77}, {'connected_gene': 'CNOT6L', 'score': 42.0}, {'connected_gene': 'RPL7P17', 'score': 9.98}, {'connected_gene': 'RNU6-1187P', 'score': 0.44}, {'connected_gene': 'GC04M077151', 'score': 0.44}]
chr4	GH04I077193	77193058	77194800	0.89	[{'connected_gene': 'CCNG2', 'score': 7.49}, {'connected_gene': 'FTLP9', 'score': 0.34}]
chr4	GH04I077189	77189761	77190822	0.46	[{'connected_gene': 'CCNG2', 'score': 11.94}, {'connected_gene': 'FTLP9', 'score': 0.31}]
chr4	GH04I077196	77196375	77197673	0.49	[{'connected_gene': 'CCNG2', 'score': 7.55}, {'connected_gene': 'FTLP9', 'score': 0.37}]
chr4	GH04I077201	77201032	77203649	0.64	[{'connected_gene': 'CCNG2', 'score': 11.76}, {'connected_gene': 'FTLP9', 'score': 0.39}]
chr4	GH04I077100	77100388	77100537	0.2	[{'connected_gene': 'CCNG2', 'score': 11.92}, {'connected_gene': 'GC04M077080', 'score': 0.39}, {'connected_gene': 'RPL7P17', 'score': 0.37}]
chr4	GH04I077095	77095201	77095800	1.15	[{'connected_gene': 'CCNG2', 'score': 13.27}, {'connected_gene': 'RPL7P17', 'score': 0.39}, {'connected_gene': 'GC04M077080', 'score': 0.37}]
chr4	GH04I077346	77346870	77348371	0.43	[{'connected_gene': 'CCNG2', 'score': 4.37}, {'connected_gene': 'GC04P077349', 'score': 0.77}, {'connected_gene': 'GC04M077307', 'score': 0.31}]
chr4	GH04I077005	77005845	77012098	1.33	[{'connected_gene': 'SEPT11', 'score': 17.92}, {'connected_gene': 'SOWAHB', 'score': 7.09}, {'connected_gene': 'CCNG2', 'score': 5.65}, {'connected_gene': 'CCNI', 'score': 1.56}, {'connected_gene': 'PIR49374', 'score': 0.34}, {'connected_gene': 'LOC105377291', 'score': 0.29}]
chr4	GH04I077174	77174608	77175828	0.69	[{'connected_gene': 'CCNI', 'score': 12.03}, {'connected_gene': 'CCNG2', 'score': 0.37}, {'connected_gene': 'FTLP9', 'score': 0.26}]
chr4	GH04I077176	77176368	77179321	0.66	[{'connected_gene': 'CCNI', 'score': 12.02}, {'connected_gene': 'CCNG2', 'score': 6.56}, {'connected_gene': 'FTLP9', 'score': 0.28}]
chr4	GH04I077175	77174033	77174521	0.4	[{'connected_gene': 'CCNI', 'score': 12.03}, {'connected_gene': 'CCNG2', 'score': 0.37}, {'connected_gene': 'FTLP9', 'score': 0.26}]
chr4	GH04I077171	77171028	77173396	0.51	[{'connected_gene': 'CCNI', 'score': 12.03}, {'connected_gene': 'CCNG2', 'score': 6.11}, {'connected_gene': 'FTLP9', 'score': 0.26}]
chr4	GH04I077369	77369721	77369729	0.23	[{'connected_gene': 'CXCL13', 'score': 2.34}, {'connected_gene': 'LOC100421142', 'score': 0.37}, {'connected_gene': 'GC04M077367', 'score': 0.29}, {'connected_gene': 'CCNG2', 'score': 0.08}]
chr4	GH04I077203	77203708	77203857	0.67	[{'connected_gene': 'FTLP9', 'score': 0.39}, {'connected_gene': 'CCNG2', 'score': 0.25}]
chr4	GH04I077433	77433201	77433601	0.56	[{'connected_gene': 'GC04M077367', 'score': 0.29}, {'connected_gene': 'LOC105377295', 'score': 0.21}, {'connected_gene': 'CCNG2', 'score': 0.06}]
chr4	GH04I077349	77349908	77349997	0.2	[{'connected_gene': 'GC04P077349', 'score': 550.77}, {'connected_gene': 'LOC100421142', 'score': 550.77}, {'connected_gene': 'CCNG2', 'score': 0.08}]