PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000540654	[[62703856, 62703958], [62744655, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751496], [62751793, 62752296]]	[[62748843, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751496], [62751793, 62752162]]
ENST00000360421	[[62744068, 62744353], [62744655, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752455]]	[[62744265, 62744353], [62744655, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
ENST00000377871	[[62744073, 62744353], [62744616, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752429]]	[[62744265, 62744353], [62744616, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
ENST00000421062	[[62744265, 62744353], [62744616, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]	[[62744265, 62744353], [62744616, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
ENST00000458333	[[62744265, 62744353], [62744655, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]	[[62744265, 62744353], [62744655, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
ENST00000537349	[[62747339, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751241, 62751364]]	None
NM_004790	[[62744068, 62744353], [62744616, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752495]]	[[62744265, 62744353], [62744616, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
NM_153276	[[62744068, 62744353], [62744655, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752495]]	[[62744265, 62744353], [62744655, 62744859], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
NM_153278	[[62744068, 62744353], [62744616, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752495]]	[[62744265, 62744353], [62744616, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]
NM_153277	[[62744068, 62744353], [62744655, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752495]]	[[62744265, 62744353], [62744655, 62744727], [62746959, 62747068], [62747205, 62747420], [62748456, 62748572], [62748731, 62748855], [62749313, 62749482], [62751008, 62751163], [62751415, 62751519], [62751793, 62752162]]

Promoter

Chrom	Start	End	Description
chr11	62752220	62752231	CAGE_peak_4_at_SLC22A6_5end
chr11	62752254	62752272	CAGE_peak_2_at_SLC22A6_5end
chr11	62752284	62752304	CAGE_peak_3_at_SLC22A6_5end
chr11	62752310	62752313	CAGE_peak_7_at_SLC22A6_5end
chr11	62752432	62752445	CAGE_peak_1_at_SLC22A6_5end
chr11	62752463	62752474	CAGE_peak_5_at_SLC22A6_5end
chr11	62752484	62752495	CAGE_peak_6_at_SLC22A6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I062906	62906049	62906238	1.05	[{'connected_gene': 'SLC22A6', 'score': 11.0}, {'connected_gene': 'TMEM223', 'score': 4.4}, {'connected_gene': 'ENSG00000257002', 'score': 0.77}, {'connected_gene': 'GC11P062886', 'score': 0.37}]
chr11	GH11I062925	62925749	62925858	0.43	[{'connected_gene': 'SLC22A6', 'score': 10.89}, {'connected_gene': 'CHRM1', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.44}, {'connected_gene': 'LOC105369333', 'score': 0.44}]
chr11	GH11I062923	62923835	62923938	0.49	[{'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'CHRM1', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.44}]
chr11	GH11I062975	62975229	62975418	0.67	[{'connected_gene': 'SLC22A6', 'score': 0.44}, {'connected_gene': 'GC11P062953', 'score': 0.34}]
chr11	GH11I062985	62984957	62985016	0.5	[{'connected_gene': 'SLC22A6', 'score': 550.77}, {'connected_gene': 'GC11P062953', 'score': 0.29}]
chr11	GH11I062984	62984779	62984838	0.5	[{'connected_gene': 'SLC22A6', 'score': 550.77}, {'connected_gene': 'GC11P062953', 'score': 0.29}]
chr11	GH11I062958	62958192	62960063	0.8	[{'connected_gene': 'BSCL2', 'score': 12.26}, {'connected_gene': 'GC11P062953', 'score': 0.44}, {'connected_gene': 'SLC22A6', 'score': 0.31}]
chr11	GH11I062887	62887744	62891774	1.38	[{'connected_gene': 'BSCL2', 'score': 39.46}, {'connected_gene': 'TAF6L', 'score': 23.65}, {'connected_gene': 'SLC3A2', 'score': 10.87}, {'connected_gene': 'SNHG1', 'score': 10.87}, {'connected_gene': 'SNORD28', 'score': 10.85}, {'connected_gene': 'TUT1', 'score': 10.78}, {'connected_gene': 'SNORD22', 'score': 10.67}, {'connected_gene': 'SLC22A6', 'score': 10.1}, {'connected_gene': 'AHNAK', 'score': 9.47}, {'connected_gene': 'TTC9C', 'score': 5.85}, {'connected_gene': 'TMEM223', 'score': 5.21}, {'connected_gene': 'GC11P062886', 'score': 0.77}, {'connected_gene': 'ENSG00000257002', 'score': 0.37}]
chr11	GH11I062922	62922046	62922535	0.89	[{'connected_gene': 'CHRM1', 'score': 550.77}, {'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.39}]
chr11	GH11I062927	62922779	62922917	0.48	[{'connected_gene': 'CHRM1', 'score': 550.77}, {'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.39}]